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  1. Accessory Genes
  2. Acknowledgements and citing
  3. Acknowledgments
  4. Acquiring and installing GPRO
  5. Announcements
  6. Aphid transmission factor
  7. BLAST
  8. Bel/Pao
  9. CAARD:412 mdg1
  10. CAARD:Alpharetroviridae
  11. CAARD:Athila
  12. CAARD:Bel
  13. CAARD:Betaretroviridae
  14. CAARD:COG3577
  15. CAARD:COG5550
  16. CAARD:CRM
  17. CAARD:Caulimoviridae
  18. CAARD:Cer2-3
  19. CAARD:Chrofung
  20. CAARD:CsRN1
  21. CAARD:DDI
  22. CAARD:DTG/ILG Template
  23. CAARD:Del
  24. CAARD:Deltaretroviridae
  25. CAARD:Errantiviridae
  26. CAARD:Galadriel
  27. CAARD:Gammaretroviridae
  28. CAARD:Lentiviridae
  29. CAARD:Mag
  30. CAARD:Micropia
  31. CAARD:NIX
  32. CAARD:Osvaldo
  33. CAARD:Pepsins A1a d1
  34. CAARD:Pepsins A1a d2
  35. CAARD:Pepsins A1b d1
  36. CAARD:Pepsins A1b d2
  37. CAARD:Reina
  38. CAARD:SASPase
  39. CAARD:Spumaretroviridae
  40. CAARD:TF1-2
  41. CAARD:Tat
  42. CAARD:Test
  43. CAARD:Ty1 Copia
  44. CAARD:Ty3
  45. CAARD Alignment:Ty1 Copia
  46. CGIN1
  47. CIN-1
  48. Caulimoviridae
  49. Clan AA
  50. Contact
  51. DUTPase
  52. Donate
  53. Donate proceed
  54. Donating legal disclaimer
  55. EditorsGuide
  56. Element:17.6
  57. Element:1731
  58. Element:297
  59. Element:412
  60. Element:ASSBSV
  61. Element:AcGIN1 genomic with introns
  62. Element:AcGIN2 EST
  63. Element:AcGINGER1-1 Repbaseaccession Ginger1-1 AC with 138ntTIRs
  64. Element:AgFOB1
  65. Element:Amn-ichi
  66. Element:Amn-ni
  67. Element:Amn-san
  68. Element:ApBIN1a
  69. Element:ApBIN1b
  70. Element:ApBIN1c
  71. Element:ApBIN1d
  72. Element:ApBIN1e
  73. Element:ApBIN1f
  74. Element:ApBIN1g
  75. Element:ApBIN1h
  76. Element:ApBIN1j
  77. Element:ApBIN1k
  78. Element:ApBIN1l
  79. Element:ApBIN1m
  80. Element:ApBIN1n
  81. Element:ApBIN1o
  82. Element:ApBIN1p
  83. Element:ApCIN1a
  84. Element:ApCIN1b
  85. Element:ApCIN1c
  86. Element:ApCIN1d
  87. Element:ApCIN1e
  88. Element:ApCIN1f
  89. Element:ApCIN1j
  90. Element:ApCIN1n
  91. Element:ApCIN1q
  92. Element:ApGIN3a
  93. Element:ApGIN3b
  94. Element:ApGIN3c
  95. Element:ApGIN4a
  96. Element:ApGIN4b
  97. Element:ApGIN4c
  98. Element:ApGIN4d
  99. Element:ApGIN4e
  100. Element:ApGIN4f
  101. Element:ApGIN5a
  102. Element:ApGIN5b
  103. Element:ApGIN5c
  104. Element:ApGIN5e
  105. Element:ApGIN5f
  106. Element:ApGIN6a
  107. Element:ApGIN6b
  108. Element:ApGIN6c
  109. Element:ApGIN7a
  110. Element:ApGIN7b
  111. Element:ApGIN7c
  112. Element:ApGIN7d
  113. Element:ApGINGER1a
  114. Element:ApGINGER1b
  115. Element:ApGINGER1c
  116. Element:ApGINGER1d
  117. Element:ApGINGER1e
  118. Element:ApGINGER1f
  119. Element:ApGINGER2a
  120. Element:ApGINGER2b
  121. Element:ApGINGER2f
  122. Element:Araco
  123. Element:Athila4-1
  124. Element:B1147A04.5
  125. Element:BAEVM
  126. Element:BFV
  127. Element:BIV
  128. Element:BLV
  129. Element:BRRV
  130. Element:BSGFV
  131. Element:BSMyV
  132. Element:BSOLV
  133. Element:BSVAV
  134. Element:Bagy-1
  135. Element:Bagy-2
  136. Element:Batata
  137. Element:Beetle1
  138. Element:Bel
  139. Element:BfGINGER1-1 with79ntTIRs
  140. Element:BfGINGER2-1 Repbaseaccession Ginger2-1 BF
  141. Element:Blastopia
  142. Element:BmGINGER2a with 37nt TIRs
  143. Element:BmGINGER2b
  144. Element:Boudicca
  145. Element:BsCVBV
  146. Element:BtCGIN1 mRNA
  147. Element:BtGIN1 mRNA
  148. Element:BtKRBA2
  149. Element:BtSCAND3
  150. Element:Burdock
  151. Element:CAEV
  152. Element:CERV
  153. Element:CFG1
  154. Element:CLNV
  155. Element:CRM
  156. Element:CSSV
  157. Element:CSVMV
  158. Element:CYMV
  159. Element:CaMV
  160. Element:Calypso
  161. Element:CbCIN1
  162. Element:CcCIN1
  163. Element:Cer1
  164. Element:Cer10-1
  165. Element:Cer2
  166. Element:Cer3
  167. Element:Cer4
  168. Element:Cer5
  169. Element:Cer6
  170. Element:Cer7
  171. Element:Cereba
  172. Element:CfCGIN1 mRNA
  173. Element:CfGIN1 mRNA
  174. Element:CfKRBA2
  175. Element:CfSCAND3
  176. Element:Cft-1
  177. Element:CgFOB1 partial mRNA
  178. Element:Cgret
  179. Element:ChKRBA2
  180. Element:ChSCAND3
  181. Element:CiCIN1
  182. Element:CiGIN2 mRNA
  183. Element:Cico1
  184. Element:Cigr-1
  185. Element:Cinful-1
  186. Element:Circe
  187. Element:CmYLCV
  188. Element:CoDi2.4
  189. Element:CoDi3.1
  190. Element:CoDi4.1
  191. Element:CoDi4.3
  192. Element:CoDi4.4
  193. Element:CoDi4.5
  194. Element:CoDi5.1
  195. Element:CoDi5.2
  196. Element:CoDi5.3
  197. Element:CoDi5.4
  198. Element:CoDi5.5
  199. Element:CoDi5.6
  200. Element:CoDi6.1
  201. Element:CoDi6.2
  202. Element:CoDi6.3
  203. Element:CoDi6.4
  204. Element:CoDi6.5
  205. Element:CoDi6.6
  206. Element:CoDi6.7
  207. Element:CoDi7.1
  208. Element:ComYMV
  209. Element:Copia
  210. Element:CsGIN2 genomic with introns
  211. Element:CsRN1
  212. Element:Cubel
  213. Element:Cyclops-2
  214. Element:DBV
  215. Element:DRM
  216. Element:Dane-1
  217. Element:Del
  218. Element:Diaspora
  219. Element:DnKRBA2
  220. Element:DnSCAND3
  221. Element:DpCIN1
  222. Element:DrCIN1
  223. Element:DrFV-1
  224. Element:DrGIN2-1 mRNA
  225. Element:DrGIN2-2 EST
  226. Element:DrMV
  227. Element:EFV
  228. Element:EIAV
  229. Element:EVCV
  230. Element:EcCGIN1 mRNA
  231. Element:EcGIN1 mRNA
  232. Element:EcKRBA2
  233. Element:EcSCAND3
  234. Element:Endovir1-1
  235. Element:FFV
  236. Element:FIV
  237. Element:FMV
  238. Element:FcKRBA2
  239. Element:FcSCAND3
  240. Element:FeLV
  241. Element:Fourf
  242. Element:FrGIN2 genomic with introns
  243. Element:G-Rhodo
  244. Element:GaGIN2 genomic with introns
  245. Element:GaLV
  246. Element:Gabel
  247. Element:GalEa1
  248. Element:Galadriel
  249. Element:GfCIN1
  250. Element:GgGIN1 mRNA
  251. Element:GgGIN2 mRNA
  252. Element:GiCIN1
  253. Element:Gimli
  254. Element:Gloin
  255. Element:Gmr1
  256. Element:Grande1-4
  257. Element:Grasshopper
  258. Element:Gulliver
  259. Element:Gypsy
  260. Element:Gypsyvir
  261. Element:HERV-E
  262. Element:HERV-K10
  263. Element:HFV
  264. Element:HIV-1
  265. Element:HIV-2
  266. Element:HMS-Beagle
  267. Element:HTLV-1
  268. Element:HTLV-2
  269. Element:HmCIN1
  270. Element:HmGINA1
  271. Element:HmGINA2
  272. Element:HmGINA3
  273. Element:HmGINA4
  274. Element:HmGINA5
  275. Element:HmGINGER1-3 with136ntTIRs
  276. Element:HmGINGER1 mRNA
  277. Element:HmGINGER2-1 Repbaseaccession Ginger2-1 HM
  278. Element:HmGINNY1
  279. Element:HmGINNY2
  280. Element:HmGINO1
  281. Element:HmGINO2 with 45ntTIRs
  282. Element:HmGINO3
  283. Element:Hopscotch
  284. Element:HsCGIN1 mRNA
  285. Element:HsGIN1 mRNA
  286. Element:HsKRBA2
  287. Element:HsSCAND3
  288. Element:Humnum
  289. Element:Hydra1-1
  290. Element:Hydra1-2
  291. Element:Hydra2-1
  292. Element:Hydra3-1
  293. Element:ISAf
  294. Element:ISEc
  295. Element:ISLa
  296. Element:ISSc
  297. Element:ISTv1
  298. Element:ISTv2 mRNA
  299. Element:ISTv3 mRNA
  300. Element:Idefix
  301. Element:Ifg7
  302. Element:JSRV
  303. Element:K-HERV
  304. Element:KTSV
  305. Element:Kabuki
  306. Element:KoRV
  307. Element:Koala
  308. Element:Kobel
  309. Element:Koco
  310. Element:LLDAV
  311. Element:LPDV
  312. Element:LaKRBA2
  313. Element:LaSCAND3
  314. Element:LaSCAND3-2
  315. Element:LaSCAND3-3
  316. Element:Legolas
  317. Element:LsGINGER2-1 Repbaseaccession Ginger2-1 LS
  318. Element:LtFOB1 mRNA
  319. Element:MGLR3
  320. Element:MMTV
  321. Element:MPMV
  322. Element:Mabel
  323. Element:Mag
  324. Element:Maggy
  325. Element:Max
  326. Element:MbCIN1
  327. Element:MdEV
  328. Element:MdGIN1 mRNA
  329. Element:Mdg1
  330. Element:Mdg3
  331. Element:MeGIN2 genomic with introns
  332. Element:MeSCAND3
  333. Element:Melmoth
  334. Element:MfGIN1 mRNA
  335. Element:MgGINGER2 ORF with no TIRs
  336. Element:MiMV
  337. Element:Micropia
  338. Element:MmCGIN1 mRNA
  339. Element:MmGIN1 mRNA
  340. Element:Monkey
  341. Element:Moose
  342. Element:Mtanga
  343. Element:MuERV-L
  344. Element:MuLV
  345. Element:Nabel
  346. Element:Ninja
  347. Element:Nomad
  348. Element:NvCIN1
  349. Element:NvGINGER2-1 Repbaseaccession Ginger2-1 NV
  350. Element:NvGINGER2-2 Repbaseaccession Ginger2-2 NV
  351. Element:NveCIN1-1 Repbaseaccession Polinton-N1 NV
  352. Element:NveCIN1-2
  353. Element:OaGIN1 mRNA
  354. Element:OcKRBA2
  355. Element:OcSCAND3
  356. Element:OgGIN1
  357. Element:Ogre
  358. Element:Olco1
  359. Element:OnGIN2 EST
  360. Element:Opie-2
  361. Element:Oryco1-1
  362. Element:Oryco1-2
  363. Element:Osser
  364. Element:Osvaldo
  365. Element:PCSV
  366. Element:PERV-MSL
  367. Element:PVCV
  368. Element:PaGIN1 mRNA
  369. Element:Pao
  370. Element:Peabody
  371. Element:Poco
  372. Element:Purbel
  373. Element:PvKRBA2
  374. Element:PvSCAND3
  375. Element:PyERV
  376. Element:PyRE1G1
  377. Element:Pyggy
  378. Element:Pyret
  379. Element:RCHO-K1
  380. Element:REM1
  381. Element:REV
  382. Element:RIRE2
  383. Element:RSV
  384. Element:RTBV
  385. Element:RTVL-Ia
  386. Element:RTvr2
  387. Element:RcGIN2 EST
  388. Element:Real
  389. Element:Reina
  390. Element:RetroSor1
  391. Element:Retrofit
  392. Element:Retrosat-2
  393. Element:RnGIN1 mRNA
  394. Element:Roo
  395. Element:RpGINGER2a
  396. Element:RpGINGER2b
  397. Element:RuFDV
  398. Element:SA-OMVV
  399. Element:SERV
  400. Element:SFV-1
  401. Element:SIRE1-4
  402. Element:SIVAGM
  403. Element:SIVMAC
  404. Element:SIVMND
  405. Element:SMRV-H
  406. Element:SPM
  407. Element:SRV-1
  408. Element:STcLV2PP1664
  409. Element:SURL
  410. Element:SVBV
  411. Element:Saci-6
  412. Element:SbCMV
  413. Element:ScBIMV
  414. Element:ScFOB1
  415. Element:Sinbad
  416. Element:Skipper
  417. Element:Skippy
  418. Element:SmCIN1 Repbaseaccession Polinton-1 SM with intron
  419. Element:SnRV
  420. Element:SpCIN1
  421. Element:Spirobel
  422. Element:Springer
  423. Element:SsGIN1 mRNA
  424. Element:SsSCAND3
  425. Element:Sto-4
  426. Element:Sushi-ichi
  427. Element:Suzu
  428. Element:TF1
  429. Element:TF2
  430. Element:TSI-9
  431. Element:TVCV
  432. Element:TaBV
  433. Element:Tamy
  434. Element:Tas
  435. Element:Tat4-1
  436. Element:TcCIN1
  437. Element:TcGINGER2
  438. Element:Tdh2
  439. Element:Ted
  440. Element:Tft2
  441. Element:TgGIN1 mRNA
  442. Element:TgGIN2 mRNA
  443. Element:Tkm1
  444. Element:Tma
  445. Element:Tnt-1
  446. Element:Tntom1
  447. Element:ToRTL1
  448. Element:Tom
  449. Element:Tor1
  450. Element:Tor2
  451. Element:Tor4a
  452. Element:Tork4
  453. Element:Tribel
  454. Element:Tricopia
  455. Element:TsGINGER2
  456. Element:Tse1
  457. Element:Tse3
  458. Element:TtKRBA2
  459. Element:TtSCAND3
  460. Element:Tto1
  461. Element:Tv1
  462. Element:Ty1B
  463. Element:Ty2
  464. Element:Ty3-1
  465. Element:Ty4
  466. Element:Ulysses
  467. Element:V12
  468. Element:VMV
  469. Element:Vitico1-1
  470. Element:Vitico1-2
  471. Element:WdSV
  472. Element:Woot
  473. Element:XEN1
  474. Element:Xanthias
  475. Element:XlGIN2 mRNA
  476. Element:XmCIN1
  477. Element:XtCIN1
  478. Element:XtGIN2
  479. Element:Yokozuna
  480. Element:Yoyo
  481. Element:ZFERV
  482. Element:ZFERV-2
  483. Element:Zam
  484. Element:Zebel
  485. Element:Zeco1
  486. Element:Zeco2
  487. Element:ZrFOB1
  488. Element:marY1
  489. Element:pCal
  490. Element:pCretro3
  491. Element:pCretro6
  492. Element:rGmr1
  493. Elements
  494. Envelope
  495. Eukaryotic chromodomains
  496. FOB1
  497. Flowchart
  498. GIN-1
  499. GIN-2
  500. GIN/GINGER TRs and INTs

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Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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