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  1. (hist) ‎CAARD Alignment:Ty1 Copia ‎[78,568 bytes]
  2. (hist) ‎Map:Clanaa ‎[40,471 bytes]
  3. (hist) ‎Ty3/Gypsy ‎[35,201 bytes]
  4. (hist) ‎Phylogeny: AP clan AA aspartic peptidases ‎[27,018 bytes]
  5. (hist) ‎Worksheet annotation system ( I ) ‎[25,765 bytes]
  6. (hist) ‎Phylogeny:INT GIN/GINGER ‎[24,803 bytes]
  7. (hist) ‎Map:Pr ‎[23,107 bytes]
  8. (hist) ‎Ty1/Copia ‎[22,668 bytes]
  9. (hist) ‎CAARD:DTG/ILG Template ‎[22,591 bytes]
  10. (hist) ‎Caulimoviridae ‎[22,341 bytes]
  11. (hist) ‎Worksheet annotation system ( II ) ‎[22,191 bytes]
  12. (hist) ‎CAARD:Pepsins A1a d1 ‎[19,327 bytes]
  13. (hist) ‎The Gypsy Database:About ‎[18,651 bytes]
  14. (hist) ‎Terms ocl ‎[17,918 bytes]
  15. (hist) ‎The Gypsy Database:Privacy policy ‎[17,888 bytes]
  16. (hist) ‎PhylogenyTrees ‎[17,714 bytes]
  17. (hist) ‎CAARD:Pepsins A1a d2 ‎[17,587 bytes]
  18. (hist) ‎Menu Tools: Functional analyses ‎[17,145 bytes]
  19. (hist) ‎Acknowledgments ‎[15,469 bytes]
  20. (hist) ‎CAARD:Pepsins A1b d1 ‎[14,717 bytes]
  21. (hist) ‎Map:Chrall ‎[14,713 bytes]
  22. (hist) ‎CAARD:Bel ‎[14,703 bytes]
  23. (hist) ‎Accessory Genes ‎[14,663 bytes]
  24. (hist) ‎CAARD:Pepsins A1b d2 ‎[14,256 bytes]
  25. (hist) ‎CAARD:Caulimoviridae ‎[14,171 bytes]
  26. (hist) ‎Phylogeny:AP LTR retroelements ‎[13,883 bytes]
  27. (hist) ‎Retroviridae ‎[13,448 bytes]
  28. (hist) ‎CAARD:DDI ‎[13,394 bytes]
  29. (hist) ‎Phylogeny:POL LTR retroelements ‎[13,340 bytes]
  30. (hist) ‎Phylogeny:RNaseH LTR retroelements ‎[13,318 bytes]
  31. (hist) ‎Phylogeny:RT LTR retroelements ‎[13,309 bytes]
  32. (hist) ‎CAARD:Spumaretroviridae ‎[13,099 bytes]
  33. (hist) ‎Map:Int ‎[13,063 bytes]
  34. (hist) ‎CAARD:COG5550 ‎[12,853 bytes]
  35. (hist) ‎CAARD:Chrofung ‎[12,694 bytes]
  36. (hist) ‎Mobilomics-acyrthosiphon pisum-Comments and Discussion ‎[12,667 bytes]
  37. (hist) ‎CAARD:COG3577 ‎[12,330 bytes]
  38. (hist) ‎Map:Rt ‎[12,271 bytes]
  39. (hist) ‎Map:Rnaseh ‎[12,271 bytes]
  40. (hist) ‎Map:Pol ‎[12,263 bytes]
  41. (hist) ‎Map:Gagpol ‎[12,248 bytes]
  42. (hist) ‎Map:Gag ‎[12,244 bytes]
  43. (hist) ‎CAARD:Tat ‎[12,069 bytes]
  44. (hist) ‎Phylogeny:INT LTR retroelements ‎[11,865 bytes]
  45. (hist) ‎CAARD:Errantiviridae ‎[11,750 bytes]
  46. (hist) ‎CAARD:Athila ‎[11,407 bytes]
  47. (hist) ‎CAARD:Lentiviridae ‎[11,241 bytes]
  48. (hist) ‎Phylogeny:CHR eukaryote protein domains ‎[11,059 bytes]
  49. (hist) ‎Flowchart ‎[10,599 bytes]
  50. (hist) ‎Menu Tools: Editor ‎[10,520 bytes]
  51. (hist) ‎Menu Tools: Management ‎[10,311 bytes]
  52. (hist) ‎CAARD:NIX ‎[10,297 bytes]
  53. (hist) ‎CAARD:Mag ‎[10,260 bytes]
  54. (hist) ‎CAARD:Osvaldo ‎[10,085 bytes]
  55. (hist) ‎CAARD:Betaretroviridae ‎[9,880 bytes]
  56. (hist) ‎CAARD:Reina ‎[9,716 bytes]
  57. (hist) ‎CAARD:Deltaretroviridae ‎[9,686 bytes]
  58. (hist) ‎CAARD:Del ‎[9,542 bytes]
  59. (hist) ‎CAARD:Ty3 ‎[9,510 bytes]
  60. (hist) ‎LTR Retroelements ‎[9,417 bytes]
  61. (hist) ‎LTR retroelements ‎[9,417 bytes]
  62. (hist) ‎CAARD:SASPase ‎[9,027 bytes]
  63. (hist) ‎CAARD:Micropia ‎[9,020 bytes]
  64. (hist) ‎CAARD:Cer2-3 ‎[8,862 bytes]
  65. (hist) ‎CAARD:CRM ‎[8,793 bytes]
  66. (hist) ‎CAARD:Gammaretroviridae ‎[8,699 bytes]
  67. (hist) ‎CAARD:Alpharetroviridae ‎[8,637 bytes]
  68. (hist) ‎CAARD:Galadriel ‎[8,634 bytes]
  69. (hist) ‎CAARD:CsRN1 ‎[8,580 bytes]
  70. (hist) ‎CAARD:Ty1 Copia ‎[8,580 bytes]
  71. (hist) ‎Phylogeny:GPYF LTR retroelements ‎[8,421 bytes]
  72. (hist) ‎Retroelements ‎[8,402 bytes]
  73. (hist) ‎CAARD:412 mdg1 ‎[8,393 bytes]
  74. (hist) ‎Profiles ‎[8,324 bytes]
  75. (hist) ‎CAARD:TF1-2 ‎[7,973 bytes]
  76. (hist) ‎Bel/Pao ‎[7,321 bytes]
  77. (hist) ‎Software Layout and Computing Cluster ‎[7,085 bytes]
  78. (hist) ‎Introduction and overview ‎[7,034 bytes]
  79. (hist) ‎Mouse functions and tricks ‎[7,029 bytes]
  80. (hist) ‎Help ‎[6,895 bytes]
  81. (hist) ‎Clan AA ‎[6,503 bytes]
  82. (hist) ‎Element:BSOLV ‎[6,191 bytes]
  83. (hist) ‎Menu Tools: Data preprocessing ‎[6,177 bytes]
  84. (hist) ‎Phylogeny:GagPol ‎[6,148 bytes]
  85. (hist) ‎Element:CmYLCV ‎[6,092 bytes]
  86. (hist) ‎Element:BRRV ‎[5,619 bytes]
  87. (hist) ‎EditorsGuide ‎[5,511 bytes]
  88. (hist) ‎Element:DBV ‎[5,454 bytes]
  89. (hist) ‎Element:BSVAV ‎[5,448 bytes]
  90. (hist) ‎Element:CYMV ‎[5,391 bytes]
  91. (hist) ‎Gydb help ‎[5,342 bytes]
  92. (hist) ‎Element:SbCMV ‎[5,281 bytes]
  93. (hist) ‎Element:BSGFV ‎[5,259 bytes]
  94. (hist) ‎Intro ‎[5,212 bytes]
  95. (hist) ‎Integrase ‎[5,112 bytes]
  96. (hist) ‎Phylogeny:RT Ty3/Gypsy ‎[5,068 bytes]
  97. (hist) ‎Phylogeny:AP Ty3/Gypsy ‎[5,064 bytes]
  98. (hist) ‎Phylogeny:POL Ty3/Gypsy ‎[5,052 bytes]
  99. (hist) ‎Phylogeny:INT Ty3/Gypsy ‎[5,040 bytes]
  100. (hist) ‎Movement protein ‎[5,036 bytes]
  101. (hist) ‎Phylogeny:GAGPOL Ty3/Gypsy ‎[5,035 bytes]
  102. (hist) ‎Phylogeny:GAG Ty3/Gypsy ‎[5,030 bytes]
  103. (hist) ‎Phylogeny:RNaseH Ty3/Gypsy ‎[4,978 bytes]
  104. (hist) ‎Element:DrMV ‎[4,906 bytes]
  105. (hist) ‎Element:CSSV ‎[4,790 bytes]
  106. (hist) ‎Element:ScBIMV ‎[4,763 bytes]
  107. (hist) ‎Map:Env retro ‎[4,750 bytes]
  108. (hist) ‎Element:TaBV ‎[4,636 bytes]
  109. (hist) ‎Element:BSMyV ‎[4,513 bytes]
  110. (hist) ‎Acquiring and installing GPRO ‎[4,416 bytes]
  111. (hist) ‎Element:TVCV ‎[4,147 bytes]
  112. (hist) ‎GPRO Wiki ‎[4,126 bytes]
  113. (hist) ‎LTRs and TIRs ‎[4,079 bytes]
  114. (hist) ‎Element:CaMV ‎[4,078 bytes]
  115. (hist) ‎Menu Tools: Preferences ‎[3,977 bytes]
  116. (hist) ‎Element:PCSV ‎[3,925 bytes]
  117. (hist) ‎Phylogeny:POL Ty1/Copia ‎[3,849 bytes]
  118. (hist) ‎Phylogeny:AP Ty1/Copia ‎[3,846 bytes]
  119. (hist) ‎Phylogeny:RT Ty1/Copia ‎[3,836 bytes]
  120. (hist) ‎Phylogeny:GAGPOL Ty1/Copia ‎[3,822 bytes]
  121. (hist) ‎Phylogeny:INT Ty1/Copia ‎[3,817 bytes]
  122. (hist) ‎Element:CSVMV ‎[3,810 bytes]
  123. (hist) ‎Translational transactivator Protein ‎[3,799 bytes]
  124. (hist) ‎GIN/GINGER TRs and INTs ‎[3,791 bytes]
  125. (hist) ‎Phylogeny:GAG Ty1/Copia ‎[3,787 bytes]
  126. (hist) ‎Phylogeny:RNaseH Ty1/Copia ‎[3,786 bytes]
  127. (hist) ‎Element:RTBV ‎[3,685 bytes]
  128. (hist) ‎Menu Tools: Alignment analysis ‎[3,667 bytes]
  129. (hist) ‎Element:HIV-1 ‎[3,602 bytes]
  130. (hist) ‎Element:PVCV ‎[3,583 bytes]
  131. (hist) ‎Terms and conditions of the donation ‎[3,520 bytes]
  132. (hist) ‎Element:KTSV ‎[3,517 bytes]
  133. (hist) ‎The menu ‎[3,452 bytes]
  134. (hist) ‎Element:ComYMV ‎[3,403 bytes]
  135. (hist) ‎Aphid transmission factor ‎[3,150 bytes]
  136. (hist) ‎Element:MMTV ‎[3,092 bytes]
  137. (hist) ‎Element:SVBV ‎[3,090 bytes]
  138. (hist) ‎Element:CLNV ‎[3,064 bytes]
  139. (hist) ‎SCAN/KRAB ‎[3,032 bytes]
  140. (hist) ‎Element:MiMV ‎[3,023 bytes]
  141. (hist) ‎Element:FIV ‎[3,012 bytes]
  142. (hist) ‎CIN-1 ‎[2,994 bytes]
  143. (hist) ‎Element:RuFDV ‎[2,937 bytes]
  144. (hist) ‎Element:FMV ‎[2,927 bytes]
  145. (hist) ‎Envelope ‎[2,903 bytes]
  146. (hist) ‎Element:BsCVBV ‎[2,876 bytes]
  147. (hist) ‎Protease ‎[2,835 bytes]
  148. (hist) ‎Element:CERV ‎[2,792 bytes]
  149. (hist) ‎Phylogeny:RT Retroviridae ‎[2,785 bytes]
  150. (hist) ‎Phylogeny:RNaseH Retroviridae ‎[2,779 bytes]
  151. (hist) ‎Phylogeny:AP Retroviridae ‎[2,772 bytes]
  152. (hist) ‎Element:EVCV ‎[2,772 bytes]
  153. (hist) ‎Phylogeny:POL Retroviridae ‎[2,770 bytes]
  154. (hist) ‎Phylogeny:INT Retroviridae ‎[2,764 bytes]
  155. (hist) ‎Phylogeny:GAG Retroviridae ‎[2,758 bytes]
  156. (hist) ‎Element:JSRV ‎[2,746 bytes]
  157. (hist) ‎Phylogeny:GAGPOL Retroviridae ‎[2,742 bytes]
  158. (hist) ‎Element:FFV ‎[2,737 bytes]
  159. (hist) ‎Map:Chr ‎[2,679 bytes]
  160. (hist) ‎Element:Gypsy ‎[2,674 bytes]
  161. (hist) ‎Phylogeny:ENV Retroviridae ‎[2,614 bytes]
  162. (hist) ‎Element:BIV ‎[2,610 bytes]
  163. (hist) ‎GINGER1 ‎[2,598 bytes]
  164. (hist) ‎Element:EIAV ‎[2,591 bytes]
  165. (hist) ‎Element:BFV ‎[2,589 bytes]
  166. (hist) ‎Element:HTLV-1 ‎[2,573 bytes]
  167. (hist) ‎Element:MPMV ‎[2,568 bytes]
  168. (hist) ‎Element:Ty3-1 ‎[2,555 bytes]
  169. (hist) ‎Transposase ‎[2,546 bytes]
  170. (hist) ‎Sidebars:Bottom ‎[2,540 bytes]
  171. (hist) ‎Element:SRV-1 ‎[2,473 bytes]
  172. (hist) ‎GIN-1 ‎[2,467 bytes]
  173. (hist) ‎Element:EFV ‎[2,451 bytes]
  174. (hist) ‎Element:SERV ‎[2,450 bytes]
  175. (hist) ‎Element:Opie-2 ‎[2,439 bytes]
  176. (hist) ‎Element:SMRV-H ‎[2,433 bytes]
  177. (hist) ‎Phylogeny:CHR retroelement ‎[2,414 bytes]
  178. (hist) ‎Element:LLDAV ‎[2,413 bytes]
  179. (hist) ‎Gag ‎[2,392 bytes]
  180. (hist) ‎Element:CAEV ‎[2,356 bytes]
  181. (hist) ‎Element:HERV-K10 ‎[2,350 bytes]
  182. (hist) ‎GINO ‎[2,342 bytes]
  183. (hist) ‎Element:HTLV-2 ‎[2,325 bytes]
  184. (hist) ‎Reverse Transcriptase ‎[2,297 bytes]
  185. (hist) ‎Virus associated protein ‎[2,247 bytes]
  186. (hist) ‎Phylogeny:AP Caulimoviridae ‎[2,245 bytes]
  187. (hist) ‎Element:HIV-2 ‎[2,237 bytes]
  188. (hist) ‎Element:Ty1B ‎[2,198 bytes]
  189. (hist) ‎Element:ToRTL1 ‎[2,197 bytes]
  190. (hist) ‎Element:DrFV-1 ‎[2,173 bytes]
  191. (hist) ‎Phylogeny:AP CAARD (clan AA Reference DB) ‎[2,172 bytes]
  192. (hist) ‎Element:K-HERV ‎[2,170 bytes]
  193. (hist) ‎GINA ‎[2,152 bytes]
  194. (hist) ‎GINNY ‎[2,151 bytes]
  195. (hist) ‎Element:Cereba ‎[2,144 bytes]
  196. (hist) ‎Element:Endovir1-1 ‎[2,139 bytes]
  197. (hist) ‎Element:Sushi-ichi ‎[2,122 bytes]
  198. (hist) ‎Element:REM1 ‎[2,109 bytes]
  199. (hist) ‎Element:Pyggy ‎[2,061 bytes]
  200. (hist) ‎Element:SIRE1-4 ‎[2,046 bytes]
  201. (hist) ‎Element:Monkey ‎[2,045 bytes]
  202. (hist) ‎Element:BLV ‎[2,040 bytes]
  203. (hist) ‎Element:HFV ‎[2,030 bytes]
  204. (hist) ‎Element:REV ‎[2,023 bytes]
  205. (hist) ‎Element:Grasshopper ‎[1,995 bytes]
  206. (hist) ‎Element:Cgret ‎[1,994 bytes]
  207. (hist) ‎Element:Gmr1 ‎[1,991 bytes]
  208. (hist) ‎Element:Beetle1 ‎[1,990 bytes]
  209. (hist) ‎Element:Amn-san ‎[1,989 bytes]
  210. (hist) ‎Element:Ty4 ‎[1,983 bytes]
  211. (hist) ‎Element:Tas ‎[1,982 bytes]
  212. (hist) ‎Element:Skipper ‎[1,982 bytes]
  213. (hist) ‎Element:Pyret ‎[1,979 bytes]
  214. (hist) ‎CGIN1 ‎[1,975 bytes]
  215. (hist) ‎Element:Cigr-1 ‎[1,974 bytes]
  216. (hist) ‎Element:TF2 ‎[1,969 bytes]
  217. (hist) ‎Element:Tom ‎[1,961 bytes]
  218. (hist) ‎Element:Maggy ‎[1,957 bytes]
  219. (hist) ‎Element:Del ‎[1,956 bytes]
  220. (hist) ‎Element:TF1 ‎[1,951 bytes]
  221. (hist) ‎Element:SFV-1 ‎[1,948 bytes]
  222. (hist) ‎Element:RTVL-Ia ‎[1,945 bytes]
  223. (hist) ‎Element:MGLR3 ‎[1,934 bytes]
  224. (hist) ‎Element:Amn-ni ‎[1,926 bytes]
  225. (hist) ‎Element:Amn-ichi ‎[1,925 bytes]
  226. (hist) ‎Element:Real ‎[1,923 bytes]
  227. (hist) ‎Element:Ty2 ‎[1,918 bytes]
  228. (hist) ‎Element:PyERV ‎[1,915 bytes]
  229. (hist) ‎Element:CRM ‎[1,915 bytes]
  230. (hist) ‎Element:Tma ‎[1,914 bytes]
  231. (hist) ‎Element:Galadriel ‎[1,911 bytes]
  232. (hist) ‎Element:Retrosat-2 ‎[1,910 bytes]
  233. (hist) ‎Element:ASSBSV ‎[1,908 bytes]
  234. (hist) ‎Element:Dane-1 ‎[1,901 bytes]
  235. (hist) ‎Element:Micropia ‎[1,900 bytes]
  236. (hist) ‎Element:ZFERV-2 ‎[1,884 bytes]
  237. (hist) ‎Phylogeny:COATPOL Caulimoviridae ‎[1,872 bytes]
  238. (hist) ‎Element:Ifg7 ‎[1,863 bytes]
  239. (hist) ‎Phylogeny:RNaseH Caulimoviridae ‎[1,860 bytes]
  240. (hist) ‎Phylogeny:RT Caulimoviridae ‎[1,860 bytes]
  241. (hist) ‎Element:Skippy ‎[1,853 bytes]
  242. (hist) ‎Element:pCal ‎[1,849 bytes]
  243. (hist) ‎Element:marY1 ‎[1,849 bytes]
  244. (hist) ‎Phylogeny:POL Caulimoviridae ‎[1,848 bytes]
  245. (hist) ‎Element:Peabody ‎[1,848 bytes]
  246. (hist) ‎Phylogeny:COAT Caulimoviridae ‎[1,843 bytes]
  247. (hist) ‎Element:Tse3 ‎[1,842 bytes]
  248. (hist) ‎Phylogeny:MOV Caulimoviridae ‎[1,837 bytes]
  249. (hist) ‎Element:Bagy-1 ‎[1,826 bytes]
  250. (hist) ‎Element:Cft-1 ‎[1,820 bytes]

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Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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