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  • Element:CSSV
    {{Element [[Category:Element]]
    5 KB (631 words) - 12:58, 15 March 2010
  • Element:ComYMV
    {{Element [[Category:Element]]
    3 KB (464 words) - 12:44, 22 March 2010
  • Element:ScBIMV
    {{Element [[Category:Element]]
    5 KB (617 words) - 13:34, 15 March 2010
  • Element:DBV
    {{Element [[Category:Element]]
    5 KB (701 words) - 13:10, 25 May 2010
  • Element:RuFDV
    {{Element [[Category:Element]]
    3 KB (395 words) - 10:14, 19 April 2010
  • Element:BsCVBV
    {{Element [[Category:Element]]
    3 KB (390 words) - 12:32, 15 March 2010
  • Element:CYMV
    {{Element [[Category:Element]]
    5 KB (747 words) - 19:02, 12 March 2010
  • Element:DrMV
    {{Element ...adna- and Tungroviruses), presents in the COAT ''gag''-like region of this element resembles to those identified in the nucleocapsid domains of LTR retroeleme
    5 KB (694 words) - 10:46, 24 March 2010
  • Element:CFG1
    {{Element ...7 Kb in size including LTRs of 192 and 189 nt. The internal region of this element displays a Primer Binding Site (PBS), a single Open Reading Frame (ORF) tha
    2 KB (203 words) - 16:11, 19 January 2010
  • Element:SPM
    {{Element ...M is 5.2 Kb in size including LTRs of 0.13 kb. The internal region of this element displays a Primer Binding Site (PBS), three Open Reading Frames (ORFs) that
    1 KB (172 words) - 16:09, 19 January 2010
  • Element:DRM
    {{Element ...is 4.8 Kb in size including LTRs of 0.164 kb. The internal region of this element displays a Primer Binding Site (PBS), a single Open Reading Frame (ORF) tha
    1 KB (170 words) - 16:09, 19 January 2010
  • Element:Nabel
    {{Element ...is an acronym derived from “''<u>Na</u>sonia vitripennis <u>Bel</u>/Pao'' element”. ''Nabel'' belongs to the ''Bel'' clade ([[Literature:14755|Copeland ''e
    1 KB (166 words) - 17:24, 16 December 2009
  • Element:Araco
    {{Element ...iana'' ([[Literature:100596|Llorens ''et al''. 2009]]). The genome of this element is about 4.8 Kb in size (4858 bp long) including a 438-bp 5’LTR and a 442
    1,006 bytes (134 words) - 14:57, 19 January 2010
  • Element:Tdh2
    {{Element ...yomyces hansenii'' ([[Literature:54327|Neuvéglise ''et al.'' 2002]]). This element belongs to ''Ty (Pseudovirus)'' clade one of the three original genera on w
    2 KB (222 words) - 16:39, 27 January 2010
  • Element:Poco
    {{Element ...ulus trichocarpa'') ([[Literature:100596|Llorens ''et al''. 2009]]). This element belongs to ''Oryco'' clade within Branch 2 of the ''Ty1/Copia'' family ([[L
    1 KB (169 words) - 15:09, 19 January 2010
  • Element:Zeco2
    {{Element ...y1/Copia''-like LTR retrotransposon described, together its closer related element ''Zeco1'', in the genome of the zebrafish (''Danio rerio'') ([[Literature:9
    1 KB (194 words) - 09:01, 16 March 2010
  • Element:Olco1
    {{Element [[Category:Element]]
    1 KB (201 words) - 16:28, 27 January 2010
  • Element:Batata
    {{Element ...clade ([[Literature:100596|Llorens ''et al''. 2009]]). The genome of this element is 4248 bp in size and displays a single ORF encoding for both the gag and
    1 KB (153 words) - 14:30, 19 January 2010
  • Element:PyERV
    {{Element ...([[Literature:32642|Huder ''et al.'' 2002]]). The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Trp</sup>,
    2 KB (245 words) - 07:57, 3 May 2010
  • Element:XEN1
    {{Element ...([[Literature:35936|Kambol ''et al.'' 2003]]). The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Lys2</sup>
    1 KB (189 words) - 11:43, 7 September 2010
  • Element:SnRV
    {{Element [[Category:Element]]
    2 KB (226 words) - 08:46, 4 May 2010
  • Element:BFV
    {{Element [[Category:Element]]
    3 KB (351 words) - 09:07, 4 May 2010
  • Element:FFV
    {{Element [[Category:Element]]
    3 KB (348 words) - 09:00, 4 May 2010
  • Element:EFV
    {{Element [[Category:Element]]
    2 KB (326 words) - 09:04, 4 May 2010
  • Element:ASSBSV
    {{Element [[Category:Element]]
    2 KB (241 words) - 08:04, 4 May 2010
  • Element:rGmr1
    {{Element [[Category:Element]]
    2 KB (204 words) - 00:54, 25 December 2009
  • Element:Boudicca
    {{Element [[Category:Element]]
    2 KB (233 words) - 23:32, 28 November 2009
  • Element:ZFERV
    {{Element [[Category:Element]]
    1 KB (195 words) - 08:00, 4 May 2010
  • Element:Tor1
    {{Element ...ed here with no apparent homology each other). The internal region of this element contains a Primer Binding Site (PBS), coding region and Polypurine Tract (P
    1 KB (155 words) - 16:01, 14 January 2010
  • Element:Tor2
    {{Element ...ed here with no apparent homology each other). The internal region of this element contains a Primer Binding Site (PBS), coding region and Polypurine Tract (P
    1 KB (158 words) - 23:41, 22 December 2009
  • Element:Tor4a
    {{Element ...ed LTRs with no apparent homology each other). The internal region of this element contains a Primer Binding Site (PBS), coding region and Polypurine Tract (P
    1 KB (168 words) - 23:42, 22 December 2009
  • Element:Gmr1
    {{Element The internal region of this element displays a Primer Binding Site (PBS)
    2 KB (263 words) - 00:37, 25 December 2009
  • Element:Spirobel
    {{Element ...is an acronym derived from "''Trichinella <u>spi</u>ralis <u>Bel</u>/Pao'' element". ''Spirobel'' belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''
    1 KB (163 words) - 17:48, 16 December 2009
  • Element:Ty4
    {{Element [[Category:Element]]
    2 KB (272 words) - 16:35, 27 January 2010
  • Element:Ty2
    {{Element ...002]]). The central PPT2 has been demonstrated to be not essential for the element transposition ([[Literature:30799|Heyman ''et al.'' 2003]]; [[Literature:23
    2 KB (261 words) - 16:38, 27 January 2010
  • Element:Hopscotch
    {{Element [[Category:Element]]
    1 KB (157 words) - 09:26, 13 January 2010
  • Element:Melmoth
    {{Element ...2009]]). ''Melmoth'' of ''Arabidopsis'' is taken as a representative. This element is 4769 bp in size, including 128-bp LTRs. The internal region encodes for
    1 KB (142 words) - 09:53, 13 January 2010
  • Element:Fourf
    {{Element ...1996]]; [[Literature:23437|Fu et al. 2002]]). The internal region of this element contains a Primer Binding Site (PBS) complementary to a tRNA<sup>iMet</sup>
    2 KB (223 words) - 10:02, 25 January 2010
  • Element:V12
    {{Element ...lm.nih.gov/nuccore/152926308 Kalendar ''et al.'' 2007], unpublished). This element belongs to ''Tork'' clade within the Branch 2 of ''Ty1/Copia'' family ([[Li
    1 KB (147 words) - 14:32, 19 January 2010
  • Element:Xanthias
    {{Element [[Category:Element]]
    1 KB (145 words) - 15:51, 13 January 2010
  • Element:Purbel
    {{Element ...ng LTRs of 583 nt (5’LTR) and 687 nt (3’ LTR). The internal region of this element displays a single ORF for ''gag'' and ''pol'' genes. The encoded gag produc
    1 KB (199 words) - 14:04, 11 December 2009
  • Element:RTvr2
    {{Element ...rature:83886|Xiao ''et al.'' 2007]]).Phylogenetic analyses reveal how this element belongs to ''Tork'' clade within the Branch 2 of ''Ty1/Copia'' family ([[Li
    1 KB (216 words) - 14:37, 19 January 2010
  • Element:ToRTL1
    {{Element [[Category:Element]]
    2 KB (281 words) - 15:24, 13 January 2010
  • Element:Mtanga
    {{Element [[Category:Element]]
    1 KB (185 words) - 10:14, 23 December 2009
  • Element:Tricopia
    {{Element [[Category:Element]]
    1 KB (157 words) - 09:22, 14 January 2010
  • Element:Tto1
    {{Element ...Nicotiana tabacum'' ([[Literature:31156|Hirochika ''et al.'' 1996]]). This element belongs to the ''Tork'' clade within Branch 2 of the ''Ty1/Copia'' family (
    1 KB (142 words) - 14:33, 19 January 2010
  • Element:Cico1
    {{Element [[Category:Element]]
    1 KB (202 words) - 16:29, 27 January 2010
  • Element:Retrofit
    {{Element [[Category:Element]]
    1 KB (181 words) - 14:30, 18 January 2010
  • Element:Tork4
    {{Element [[Category:Element]]
    1 KB (152 words) - 15:13, 18 January 2010
  • Element:GalEa1
    {{Element [[Category:Element]]
    1 KB (200 words) - 09:23, 11 March 2010
  • Element:Zeco1
    {{Element [[Category:Element]]
    1 KB (190 words) - 16:27, 27 January 2010
  • Element:PyRE1G1
    {{Element ...(except for a single nucleotide) 204-bp LTRs. The internal region of this element contains a single long Open Reading Frame (ORF) upstream and downstream fla
    1 KB (200 words) - 16:22, 22 December 2009
  • Element:Mabel
    {{Element ...s name is an acronym derived from "''Brugia <u>ma</u>layi <u>Bel</u>/Pao'' element". ''Mabel'' belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et
    1 KB (161 words) - 18:05, 5 January 2010
  • Element:Cubel
    {{Element ...acronym derived from “''<u>Cu</u>lex quinquefasciatus'' ''<u>Bel</u>/Pao'' element”. ''Cubel'' belongs to the ''Pao'' clade ([[Literature:14755|Copeland ''e
    1 KB (163 words) - 14:11, 11 December 2009
  • Element:Tribel
    {{Element ...is an acronym derived from “''<u>Tri</u>bolium castaneum <u>Bel</u>/Pao'' element”. ''Tribel'' belongs to the ''Bel'' clade ([[Literature:14755|Copeland ''
    2 KB (225 words) - 12:12, 18 December 2009
  • Element:Gabel
    {{Element ...an acronym derived from “''<u>Ga</u>sterosteus aculeatus <u>Bel</u>/Pao'' element”. ''Gabel'' belongs to the ''Suzu'' clade ([[Literature:14755|Copeland ''
    1 KB (196 words) - 14:06, 11 December 2009
  • Element:Kobel
    {{Element ...cronym derived from ''Saccoglossus <u>ko</u>walevskii'' <u>''Bel</u>/Pao'' element. ''Kobel'' belongs to the ''Sinbad'' clade ([[Literature:14755|Copeland ''e
    1 KB (183 words) - 14:07, 11 December 2009
  • Element:Zebel
    {{Element ...onym derived from “<u>Ze</u>brafish ''<u>Bel</u>/Pao'' element”. ''Zebel'' element belongs to the ''Pao'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    1 KB (159 words) - 14:10, 11 December 2009
  • Element:Cer7
    {{Element ...enorhabditis elegans'' ([[Literature:8238|Bowen and McDonald 1999]]). This element belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    2 KB (242 words) - 17:50, 16 December 2009
  • Element:Tas
    {{Element ...in any nematode species and received its name standing for transposon-like element of ''Ascaris'' ([[Literature:100599|Aeby'' et al.'' 1986]]). Two variant fo
    2 KB (276 words) - 14:58, 24 May 2010
  • Element:Bel
    {{Element ...is 6126 bp in size, including LTRs of 361 nt. The internal region of this element displays a two ORFs: the smallest of 152 amino acids (aa) codes for an unkn
    1 KB (158 words) - 14:01, 17 December 2009
  • Element:Pao
    {{Element [[Category:Element]]
    2 KB (226 words) - 14:15, 11 December 2009
  • Element:Ninja
    {{Element [[Category:Element]]
    2 KB (225 words) - 14:13, 17 December 2009
  • Element:Sinbad
    {{Element ...' ([[Literature:14754|Copeland ''et al.'' 2006]]). About 50 copies of this element appear to reside in the ''S. mansoni'' genome.
    2 KB (213 words) - 18:05, 5 January 2010
  • Element:Roo
    {{Element ...ndicate that ''Roo'' might be a putative recombinant between a ''Bel/Pao'' element and a ''Ty3/Gypsy'' retrovirus further evidence is required to clarify if s
    1 KB (204 words) - 17:12, 16 December 2009
  • Element:Max
    {{Element [[Category:Element]]
    1 KB (202 words) - 17:01, 16 December 2009
  • Element:Suzu
    {{Element ...al PR and RH motifs have been found in the [[Gabel|''Gabel'']] ''Bel/Pao'' element also belonging to the ''Suzu'' clade ([[Literature:100596|Llorens ''et al.'
    2 KB (241 words) - 14:05, 11 December 2009
  • Element:Tamy
    {{Element [[Category:Element]]
    1 KB (177 words) - 14:15, 11 December 2009
  • Element:Moose
    {{Element [[Category:Element]]
    1 KB (171 words) - 17:41, 16 December 2009
  • Element:Humnum
    {{Element [[Category:Element]]
    1 KB (152 words) - 11:09, 23 December 2009
  • Element:Copia
    {{Element ...spp'' ([[Literature:59075|Peterson-Burch and Voytas 2002]]). The ''Copia'' element described in ''Drosophila simulans'' ([[Literature85100|Yoshioka ''et al.''
    2 KB (211 words) - 16:01, 13 January 2010
  • Element:Ty1B
    {{Element ...ee of variation ([[Literature:100661|Boeke and Sandmeyer 1991]]). ''Ty1B'' element has been take as reference sequence to our studies. ''Ty1B'' belongs to ''T
    2 KB (308 words) - 16:38, 27 January 2010
  • Element:Koala
    {{Element [[Category:Element]]
    1 KB (145 words) - 09:22, 13 January 2010
  • Element:Tkm1
    {{Element ...ize (5994 bp long), including two 385-bp LTRs. The internal region of this element presents a Primer Binding Site (PBS) complementary to a tRNA<sup>iMet</sup>
    2 KB (228 words) - 16:36, 27 January 2010
  • Element:pCal
    {{Element ...ndida albicans'' ([[Literature:48474|Matthews ''et al.'' 1997]]). ''pCal'' element belongs to ''Ty (Pseudovirus)'' clade one of the three original genera on w
    2 KB (252 words) - 16:39, 27 January 2010
  • Element:pCretro3
    {{Element [[Category:Element]]
    1 KB (157 words) - 11:19, 21 April 2010
  • Element:pCretro6
    {{Element [[Category:Element]]
    1 KB (162 words) - 11:44, 21 April 2010
  • Element:Koco
    {{Element ...Bank accession [http://www.ncbi.nlm.nih.gov/nuccore/1255921 X96971]). This element belongs to ''Copia'' clade, which gives the name to a genus within the curr
    1 KB (197 words) - 16:00, 13 January 2010
  • Element:1731
    {{Element ...''. 2009]]). ''1731'' is 4648 bp in size, including two 336-bp LTRs. This element contains a Primer Binding Site (PBS) for a tRNA<sup>iMet</sup>, two overlap
    1 KB (178 words) - 08:37, 14 January 2010
  • Element:Tse1
    {{Element ...iterature:54327|Neuvéglise ''et al.'' 2002]]). The internal region of this element presents a Primer Binding Site (PBS) and two overlapping Open Reading Frame
    1 KB (191 words) - 16:37, 27 January 2010
  • Element:Yokozuna
    {{Element ...Literature:55859|Ohbayashi ''et al.'' 1998]]). The internal region of this element contains a Primer Binding Site (PBS), a single long Open Reading Frame (ORF
    2 KB (234 words) - 15:48, 13 January 2010
  • Element:RTBV
    {{Element [[Category:Element]]
    4 KB (496 words) - 10:51, 6 May 2010
  • Element:TVCV
    {{Element [[Category:Element]]
    4 KB (573 words) - 09:39, 22 March 2010
  • Element:BRRV
    {{Element [[Category:Element]]
    5 KB (805 words) - 11:32, 14 April 2010
  • Element:PVCV
    {{Element ...100596|Llorens ''et al'' 2009]], ''Petuvirus'' genus and consequently PVCV element, although falls more-or-less close to Class 1, constitutes an independent c
    3 KB (482 words) - 13:56, 15 March 2010
  • Element:CmYLCV
    {{Element [[Category:Element]]
    6 KB (830 words) - 10:25, 6 May 2010
  • Element:MiMV
    {{Element [[Category:Element]]
    3 KB (409 words) - 10:51, 16 March 2010
  • Element:CERV
    {{Element [[Category:Element]]
    3 KB (380 words) - 13:43, 31 March 2010
  • Element:KTSV
    {{Element [[Category:Element]]
    3 KB (454 words) - 11:59, 15 March 2010
  • Element:BSGFV
    {{Element ...in Musa genome might occur as a chimeric ''Ty3/Gypsy''-BSGFV transposable element.
    5 KB (710 words) - 11:44, 15 March 2010
  • Element:BSMyV
    {{Element [[Category:Element]]
    4 KB (614 words) - 12:04, 15 March 2010
  • Element:CSVMV
    {{Element [[Category:Element]]
    4 KB (539 words) - 13:48, 15 March 2010
  • Element:BSVAV
    {{Element [[Category:Element]]
    5 KB (727 words) - 11:49, 15 March 2010
  • Element:CLNV
    {{Element [[Category:Element]]
    3 KB (436 words) - 12:13, 15 March 2010
  • Element:CaMV
    {{Element [[Category:Element]]
    4 KB (562 words) - 10:39, 22 March 2010
  • Element:FMV
    {{Element [[Category:Element]]
    3 KB (394 words) - 14:12, 17 March 2010
  • Element:LLDAV
    {{Element [[Category:Element]]
    2 KB (325 words) - 14:56, 17 March 2010
  • Element:EVCV
    {{Element [[Category:Element]]
    3 KB (388 words) - 15:28, 17 March 2010
  • Element:PCSV
    {{Element [[Category:Element]]
    4 KB (540 words) - 10:19, 16 March 2010
  • Element:SbCMV
    {{Element [[Category:Element]]
    5 KB (744 words) - 08:47, 14 April 2010

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Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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