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Page title matches

  • Element:Zeco1
    {{Element [[Category:Element]]
    1 KB (190 words) - 16:27, 27 January 2010
  • Element:PyRE1G1
    {{Element ...(except for a single nucleotide) 204-bp LTRs. The internal region of this element contains a single long Open Reading Frame (ORF) upstream and downstream fla
    1 KB (200 words) - 16:22, 22 December 2009
  • Element:Mabel
    {{Element ...s name is an acronym derived from "''Brugia <u>ma</u>layi <u>Bel</u>/Pao'' element". ''Mabel'' belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et
    1 KB (161 words) - 18:05, 5 January 2010
  • Element:Cubel
    {{Element ...acronym derived from “''<u>Cu</u>lex quinquefasciatus'' ''<u>Bel</u>/Pao'' element”. ''Cubel'' belongs to the ''Pao'' clade ([[Literature:14755|Copeland ''e
    1 KB (163 words) - 14:11, 11 December 2009
  • Element:Tribel
    {{Element ...is an acronym derived from “''<u>Tri</u>bolium castaneum <u>Bel</u>/Pao'' element”. ''Tribel'' belongs to the ''Bel'' clade ([[Literature:14755|Copeland ''
    2 KB (225 words) - 12:12, 18 December 2009
  • Element:Gabel
    {{Element ...an acronym derived from “''<u>Ga</u>sterosteus aculeatus <u>Bel</u>/Pao'' element”. ''Gabel'' belongs to the ''Suzu'' clade ([[Literature:14755|Copeland ''
    1 KB (196 words) - 14:06, 11 December 2009
  • Element:Kobel
    {{Element ...cronym derived from ''Saccoglossus <u>ko</u>walevskii'' <u>''Bel</u>/Pao'' element. ''Kobel'' belongs to the ''Sinbad'' clade ([[Literature:14755|Copeland ''e
    1 KB (183 words) - 14:07, 11 December 2009
  • Element:Zebel
    {{Element ...onym derived from “<u>Ze</u>brafish ''<u>Bel</u>/Pao'' element”. ''Zebel'' element belongs to the ''Pao'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    1 KB (159 words) - 14:10, 11 December 2009
  • Element:Cer7
    {{Element ...enorhabditis elegans'' ([[Literature:8238|Bowen and McDonald 1999]]). This element belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    2 KB (242 words) - 17:50, 16 December 2009
  • Element:Tas
    {{Element ...in any nematode species and received its name standing for transposon-like element of ''Ascaris'' ([[Literature:100599|Aeby'' et al.'' 1986]]). Two variant fo
    2 KB (276 words) - 14:58, 24 May 2010
  • Element:Bel
    {{Element ...is 6126 bp in size, including LTRs of 361 nt. The internal region of this element displays a two ORFs: the smallest of 152 amino acids (aa) codes for an unkn
    1 KB (158 words) - 14:01, 17 December 2009
  • Element:Pao
    {{Element [[Category:Element]]
    2 KB (226 words) - 14:15, 11 December 2009
  • Element:Ninja
    {{Element [[Category:Element]]
    2 KB (225 words) - 14:13, 17 December 2009
  • Element:Sinbad
    {{Element ...' ([[Literature:14754|Copeland ''et al.'' 2006]]). About 50 copies of this element appear to reside in the ''S. mansoni'' genome.
    2 KB (213 words) - 18:05, 5 January 2010
  • Element:Roo
    {{Element ...ndicate that ''Roo'' might be a putative recombinant between a ''Bel/Pao'' element and a ''Ty3/Gypsy'' retrovirus further evidence is required to clarify if s
    1 KB (204 words) - 17:12, 16 December 2009
  • Element:Max
    {{Element [[Category:Element]]
    1 KB (202 words) - 17:01, 16 December 2009
  • Element:Suzu
    {{Element ...al PR and RH motifs have been found in the [[Gabel|''Gabel'']] ''Bel/Pao'' element also belonging to the ''Suzu'' clade ([[Literature:100596|Llorens ''et al.'
    2 KB (241 words) - 14:05, 11 December 2009
  • Element:Tamy
    {{Element [[Category:Element]]
    1 KB (177 words) - 14:15, 11 December 2009
  • Element:Moose
    {{Element [[Category:Element]]
    1 KB (171 words) - 17:41, 16 December 2009
  • Element:Humnum
    {{Element [[Category:Element]]
    1 KB (152 words) - 11:09, 23 December 2009
  • Element:Copia
    {{Element ...spp'' ([[Literature:59075|Peterson-Burch and Voytas 2002]]). The ''Copia'' element described in ''Drosophila simulans'' ([[Literature85100|Yoshioka ''et al.''
    2 KB (211 words) - 16:01, 13 January 2010
  • Element:Ty1B
    {{Element ...ee of variation ([[Literature:100661|Boeke and Sandmeyer 1991]]). ''Ty1B'' element has been take as reference sequence to our studies. ''Ty1B'' belongs to ''T
    2 KB (308 words) - 16:38, 27 January 2010
  • Element:Koala
    {{Element [[Category:Element]]
    1 KB (145 words) - 09:22, 13 January 2010
  • Element:Tkm1
    {{Element ...ize (5994 bp long), including two 385-bp LTRs. The internal region of this element presents a Primer Binding Site (PBS) complementary to a tRNA<sup>iMet</sup>
    2 KB (228 words) - 16:36, 27 January 2010
  • Element:pCal
    {{Element ...ndida albicans'' ([[Literature:48474|Matthews ''et al.'' 1997]]). ''pCal'' element belongs to ''Ty (Pseudovirus)'' clade one of the three original genera on w
    2 KB (252 words) - 16:39, 27 January 2010
  • Element:pCretro3
    {{Element [[Category:Element]]
    1 KB (157 words) - 11:19, 21 April 2010
  • Element:pCretro6
    {{Element [[Category:Element]]
    1 KB (162 words) - 11:44, 21 April 2010
  • Element:Koco
    {{Element ...Bank accession [http://www.ncbi.nlm.nih.gov/nuccore/1255921 X96971]). This element belongs to ''Copia'' clade, which gives the name to a genus within the curr
    1 KB (197 words) - 16:00, 13 January 2010
  • Element:1731
    {{Element ...''. 2009]]). ''1731'' is 4648 bp in size, including two 336-bp LTRs. This element contains a Primer Binding Site (PBS) for a tRNA<sup>iMet</sup>, two overlap
    1 KB (178 words) - 08:37, 14 January 2010
  • Element:Tse1
    {{Element ...iterature:54327|Neuvéglise ''et al.'' 2002]]). The internal region of this element presents a Primer Binding Site (PBS) and two overlapping Open Reading Frame
    1 KB (191 words) - 16:37, 27 January 2010
  • Element:Yokozuna
    {{Element ...Literature:55859|Ohbayashi ''et al.'' 1998]]). The internal region of this element contains a Primer Binding Site (PBS), a single long Open Reading Frame (ORF
    2 KB (234 words) - 15:48, 13 January 2010
  • Element:RTBV
    {{Element [[Category:Element]]
    4 KB (496 words) - 10:51, 6 May 2010
  • Element:TVCV
    {{Element [[Category:Element]]
    4 KB (573 words) - 09:39, 22 March 2010
  • Element:BRRV
    {{Element [[Category:Element]]
    5 KB (805 words) - 11:32, 14 April 2010
  • Element:PVCV
    {{Element ...100596|Llorens ''et al'' 2009]], ''Petuvirus'' genus and consequently PVCV element, although falls more-or-less close to Class 1, constitutes an independent c
    3 KB (482 words) - 13:56, 15 March 2010
  • Element:CmYLCV
    {{Element [[Category:Element]]
    6 KB (830 words) - 10:25, 6 May 2010
  • Element:MiMV
    {{Element [[Category:Element]]
    3 KB (409 words) - 10:51, 16 March 2010
  • Element:CERV
    {{Element [[Category:Element]]
    3 KB (380 words) - 13:43, 31 March 2010
  • Element:KTSV
    {{Element [[Category:Element]]
    3 KB (454 words) - 11:59, 15 March 2010
  • Element:BSGFV
    {{Element ...in Musa genome might occur as a chimeric ''Ty3/Gypsy''-BSGFV transposable element.
    5 KB (710 words) - 11:44, 15 March 2010
  • Element:BSMyV
    {{Element [[Category:Element]]
    4 KB (614 words) - 12:04, 15 March 2010
  • Element:CSVMV
    {{Element [[Category:Element]]
    4 KB (539 words) - 13:48, 15 March 2010
  • Element:BSVAV
    {{Element [[Category:Element]]
    5 KB (727 words) - 11:49, 15 March 2010
  • Element:CLNV
    {{Element [[Category:Element]]
    3 KB (436 words) - 12:13, 15 March 2010
  • Element:CaMV
    {{Element [[Category:Element]]
    4 KB (562 words) - 10:39, 22 March 2010
  • Element:FMV
    {{Element [[Category:Element]]
    3 KB (394 words) - 14:12, 17 March 2010
  • Element:LLDAV
    {{Element [[Category:Element]]
    2 KB (325 words) - 14:56, 17 March 2010
  • Element:EVCV
    {{Element [[Category:Element]]
    3 KB (388 words) - 15:28, 17 March 2010
  • Element:PCSV
    {{Element [[Category:Element]]
    4 KB (540 words) - 10:19, 16 March 2010
  • Element:SbCMV
    {{Element [[Category:Element]]
    5 KB (744 words) - 08:47, 14 April 2010
  • Element:SVBV
    {{Element [[Category:Element]]
    3 KB (416 words) - 08:15, 1 April 2010
  • Element:CoDi2.4
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-I'' clade ([[Literature:100685|Maumus ''et al.'' 2009]]),
    2 KB (227 words) - 16:44, 22 February 2010
  • Element:CoDi3.1
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-I'' clade ([[Literature:100685|Maumus ''et al.'' 2009]]),
    2 KB (230 words) - 16:39, 22 February 2010
  • Element:CoDi4.1
    {{Element [[Category:Element]]
    2 KB (236 words) - 16:39, 22 February 2010
  • Element:CoDi4.3
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-I'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    2 KB (237 words) - 16:43, 22 February 2010
  • Element:CoDi4.4
    {{Element [[Category:Element]]
    2 KB (230 words) - 16:41, 22 February 2010
  • Element:CoDi4.5
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-I'' clade, within Branch 1 of the ''Ty1/Copia'' family ([
    2 KB (215 words) - 16:38, 22 February 2010
  • Element:CoDi5.1
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (184 words) - 16:32, 22 February 2010
  • Element:CoDi5.2
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (178 words) - 16:32, 22 February 2010
  • Element:CoDi5.3
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (190 words) - 16:33, 22 February 2010
  • Element:CoDi5.4
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (178 words) - 16:30, 22 February 2010
  • Element:CoDi5.5
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (177 words) - 16:31, 22 February 2010
  • Element:CoDi5.6
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (173 words) - 16:32, 22 February 2010
  • Element:CoDi6.1
    {{Element [[Category:Element]]
    1 KB (190 words) - 18:57, 8 April 2010
  • Element:CoDi6.2
    {{Element [[Category:Element]]
    2 KB (204 words) - 19:00, 8 April 2010
  • Element:CoDi6.3
    {{Element [[Category:Element]]
    2 KB (207 words) - 19:00, 8 April 2010
  • Element:CoDi6.4
    {{Element ...is 5237 bp in size, including LTRs of 413 nts. The internal region of this element encodes for a single Open Reading Frame (ORF) of 1441 amino acids containin
    2 KB (198 words) - 18:58, 8 April 2010
  • Element:CoDi6.5
    {{Element [[Category:Element]]
    1 KB (192 words) - 18:59, 8 April 2010
  • Element:CoDi6.6
    {{Element ...n size, including LTRs of 279 nt. The LTRs bounded internal region of this element encodes for two overlapping Open Reading Frames (ORFs). The first ORF conta
    2 KB (205 words) - 18:56, 8 April 2010
  • Element:CoDi6.7
    {{Element [[Category:Element]]
    1 KB (196 words) - 18:57, 8 April 2010
  • Element:CoDi7.1
    {{Element [[Category:Element]]
    2 KB (221 words) - 16:48, 22 February 2010
  • Element:pCreto3
    #REDIRECT [[Element:pCretro3]]
    30 bytes (3 words) - 11:19, 21 April 2010
  • Element:pCreto6
    #REDIRECT [[Element:pCretro6]]
    30 bytes (3 words) - 11:43, 21 April 2010
  • Element:HmGINNY2
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINNY1
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ApGINGER1a
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ApGINGER1b
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ApGINGER1c
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ApGINGER1d
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ApGINGER1e
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ApGINGER1f
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:HmGINA5
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINA4
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINA3
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINA2
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINA1
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINO3
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:HmGINO1
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:DnSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ChSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:PvSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:OcSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:DnKRBA2
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:ChKRBA2
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:PvKRBA2
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:OcKRBA2
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:MeSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:LaSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:LaKRBA2
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:TtSCAND3
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011

Page text matches

  • Element:OnGIN2 EST
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:FrGIN2 genomic with introns
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:GaGIN2 genomic with introns
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:CiGIN2 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:CsGIN2 genomic with introns
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:AcGIN1 genomic with introns
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:OaGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:MdGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:TgGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:PaGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:MfGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:BtGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:SsGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:EcGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:CfGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:GgGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:HsGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:MmGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:RnGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:BtCGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:CfCGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:EcCGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:HsCGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:MmCGIN1 mRNA
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:NvGINGER2-1 Repbaseaccession Ginger2-1 NV
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:NvGINGER2-2 Repbaseaccession Ginger2-2 NV
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:HmGINGER2-1 Repbaseaccession Ginger2-1 HM
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:LsGINGER2-1 Repbaseaccession Ginger2-1 LS
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:BfGINGER2-1 Repbaseaccession Ginger2-1 BF
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:MgGINGER2 ORF with no TIRs
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:BmGINGER2a with 37nt TIRs
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Phylogeny:ATF Caulimovirus
    rect 172 53 203 69 [[Element:EVCV|EVCV]] rect 172 94 200 110 [[Element:MiMV|MiMV]]
    893 bytes (102 words) - 09:45, 22 April 2010
  • Phylogeny:MOV Caulimoviridae
    rect 249 144 288 160 [[Element:BSOLV|BSOLV]] rect 249 166 286 182 [[Element:BSVAV|BSVAV]]
    2 KB (185 words) - 09:53, 22 April 2010
  • Phylogeny:POL Caulimoviridae
    rect 274 12 313 28 [[Element:BSGFV|BSGFV]] rect 274 34 311 50 [[Element:BSVAV|BSVAV]]
    2 KB (186 words) - 09:53, 22 April 2010
  • Phylogeny:COAT Caulimoviridae
    rect 274 78 311 94 [[Element:BSVAV|BSVAV]] rect 274 100 313 116 [[Element:BSGFV|BSGFV]]
    2 KB (186 words) - 09:52, 22 April 2010
  • Phylogeny:REV Lentivirus
    rect 140 264 183 280 [[Element:SIVMAC|SIVMAC]] rect 140 236 170 252 [[Element:HIV-2|HIV-2]]
    1 KB (119 words) - 10:52, 28 April 2010
  • Phylogeny:RT Caulimoviridae
    rect 333 166 370 182 [[Element:BSVAV|BSVAV]] rect 333 188 372 204 [[Element:BSOLV|BSOLV]]
    2 KB (188 words) - 09:54, 22 April 2010
  • Phylogeny:RNaseH Caulimoviridae
    rect 227 320 259 336 [[Element:CYMV|CYMV]] rect 227 298 251 314 [[Element:DBV|DBV]]
    2 KB (188 words) - 08:50, 20 August 2010
  • Phylogeny:COATPOL Caulimoviridae
    rect 247 109 276 125 [[Element:TaBV|TaBV]] rect 247 133 276 149 [[Element:DrMV|DrMV]]
    2 KB (189 words) - 08:25, 28 April 2010
  • Phylogeny:CHR Ty1/Copia
    rect 111 102 156 118 [[Element:CoDi4.3|CoDi4.3]] rect 111 132 156 148 [[Element:CoDi4.4|CoDi4.4]]
    938 bytes (106 words) - 10:09, 11 May 2010
  • Phylogeny:TAT Lentivirus
    rect 105 152 135 168 [[Element:HIV-1|HIV-1]] rect 105 180 148 196 [[Element:SIVAGM|SIVAGM]]
    1 KB (115 words) - 10:51, 28 April 2010
  • Phylogeny:dUTPase retroelements
    rect 312 137 345 153 [[Element:MPMV|MPMV]] rect 312 42 336 58 [[Element:DBV|DBV]]
    1 KB (145 words) - 09:00, 22 April 2010
  • Phylogeny:VIF-Q Lentivirus
    rect 90 12 141 28 [[Element:SA-OMVV|SA-OMVV]] rect 90 38 113 54 [[Element:VMV|VMV]]
    1 KB (115 words) - 10:50, 28 April 2010
  • Phylogeny:Bel1 Spumaretrovirus
    rect 119 128 142 144 [[Element:HFV|HFV]] rect 119 167 152 183 [[Element:SFV-1|SFV-1]]
    767 bytes (89 words) - 13:16, 26 April 2010
  • Phylogeny:Bel2 Spumaretrovirus
    rect 141 12 163 28 [[Element:BFV|BFV]] rect 141 46 164 62 [[Element:HFV|HFV]]
    766 bytes (89 words) - 13:16, 26 April 2010
  • Phylogeny:VPR-VPX Lentivirus
    rect 76 12 106 28 [[Element:HIV-2|HIV-2]] rect 76 33 119 49 [[Element:SIVMAC|SIVMAC]]
    937 bytes (104 words) - 10:51, 28 April 2010
  • Phylogeny:ORFB Soymovirus
    rect 101 104 143 121 [[Element:SbCMV|SbCMV]] rect 101 69 144 88 [[Element:BRRV|BRRV]]
    703 bytes (80 words) - 09:10, 22 April 2010
  • Phylogeny:AP Caulimoviridae
    rect 315 147 347 163 [[Element:CSSV|CSSV]] rect 315 477 347 493 [[Element:CaMV|CaMV]]
    2 KB (238 words) - 15:22, 17 June 2010
  • Phylogeny:CHR retroelement
    rect 101 47 127 63 [[Element:Real|Real]] rect 101 65 133 81 [[Element:Pyggy|Pyggy]]
    2 KB (232 words) - 10:10, 11 May 2010
  • Phylogeny:NEF Lentiviridae
    rect 80 12 125 28 [[Element:SIVMND|SIVMND]] rect 80 42 110 58 [[Element:HIV-1|HIV-1]]
    795 bytes (90 words) - 12:11, 17 November 2009
  • Phylogeny:ENV Sire (Ty1/Copia)
    rect 125 63 184 79 [[Element:Endovir1-1|Endovir1-1]] rect 125 91 171 107 [[Element:SIRE1-4|SIRE1-4]]
    704 bytes (85 words) - 13:59, 25 November 2009
  • Phylogeny:SORF Betaretrovirus
    rect 76 12 122 28 [[Element:SRV-1|5´SRV-1]] rect 76 38 122 54 [[Element:SRV-1|3´SRV-1]]
    845 bytes (95 words) - 11:00, 28 April 2010
  • Phylogeny:AP Caulimoviridae dom2
    rect 61 69 93 85 [[Element:PCSV|PCSV]] rect 61 98 94 114 [[Element:BRRV|BRRV]]
    776 bytes (95 words) - 15:24, 17 June 2010
  • Phylogeny:ORFC Soymovirus
    rect 108 82 148 98 [[Element:SbCMV|SbCMV]] rect 108 126 141 142 [[Element:BRRV|BRRV]]
    848 bytes (102 words) - 09:30, 22 April 2010
  • Phylogeny:ENV Retroviridae
    rect 359 475 390 491 [[Element:LPDV|LPDV]] rect 359 234 410 250 [[Element:SA-OMVV|SA-OMVV]]
    3 KB (253 words) - 14:15, 17 May 2010
  • Phylogeny:TAX Deltaretrovirus
    rect 71 12 112 28 [[Element:HTLV-1|HTLV-1]] rect 71 42 112 58 [[Element:HTLV-2|HTLV-2]]
    810 bytes (93 words) - 10:48, 28 April 2010
  • Phylogeny:REX Lentivirus
    rect 62 12 84 28 [[Element:BLV|BLV]] rect 62 42 103 58 [[Element:HTLV-2|HTLV-2]]
    804 bytes (92 words) - 10:52, 28 April 2010
  • Element:Araco
    {{Element ...iana'' ([[Literature:100596|Llorens ''et al''. 2009]]). The genome of this element is about 4.8 Kb in size (4858 bp long) including a 438-bp 5’LTR and a 442
    1,006 bytes (134 words) - 14:57, 19 January 2010
  • Phylogeny:AP Retroviridae
    rect 328 12 359 28 [[Element:KoRV|KoRV]] rect 328 31 358 47 [[Element:GALV|GALV]]
    3 KB (269 words) - 14:00, 27 April 2010
  • Element:Kabuki
    {{Element ...A<sup>Trp</sup>, an Open Reading Frame (ORF) for a <em>gag-pol</em> gene, element insertions, as well as a Polypurine Tract (PPT) adjacent to the 3&acute;LTR
    1 KB (187 words) - 16:40, 17 December 2009
  • Phylogeny:POL Retroviridae
    rect 326 151 371 167 [[Element:K-HERV|K-HERV]] rect 326 133 385 149 [[Element:HERV-K10|HERV-K10]]
    3 KB (268 words) - 08:38, 18 November 2009
  • Phylogeny:GAGPOL Retroviridae
    rect 325 27 358 43 [[Element:MPMV|MPMV]] rect 322 43 357 59 [[Element:SRV-1|SRV-1]]
    3 KB (264 words) - 08:41, 18 November 2009
  • Phylogeny:RT Retroviridae
    rect 300 107 333 123 [[Element:MPMV|MPMV]] rect 300 184 331 200 [[Element:LPDV|LPDV]]
    3 KB (270 words) - 08:35, 18 November 2009
  • Element:GALV
    #REDIRECT [[Element:GaLV]]
    26 bytes (3 words) - 08:08, 26 March 2009
  • Element:MarY1
    #REDIRECT [[Element:marY1]]
    27 bytes (3 words) - 08:40, 26 March 2009
  • Element:VdSV
    #REDIRECT [[Element:WdSV]]
    26 bytes (3 words) - 14:05, 4 June 2009
  • Element:pCreto3
    #REDIRECT [[Element:pCretro3]]
    30 bytes (3 words) - 11:19, 21 April 2010
  • Element:pCreto6
    #REDIRECT [[Element:pCretro6]]
    30 bytes (3 words) - 11:43, 21 April 2010
  • Phylogeny:INT Retroviridae
    rect 359 154 404 170 [[Element:K-HERV|K-HERV]] rect 359 138 418 154 [[Element:HERV-K10|HERV-K10]]
    3 KB (268 words) - 08:40, 18 November 2009
  • Phylogeny:RNaseH Retroviridae
    rect 301 47 333 63 [[Element:MMTV|MMTV]] rect 300 65 330 81 [[Element:JSRV|JSRV]]
    3 KB (269 words) - 08:51, 20 August 2010
  • Phylogeny:GAG Retroviridae
    rect 302 106 345 122 [[Element:SIVMAC|SIVMAC]] rect 303 91 333 107 [[Element:HIV-2|HIV-2]]
    3 KB (267 words) - 08:43, 18 November 2009
  • Element:Vitico1-1
    {{Element ...LTRs of 302 (5’LTR) and 301 nts long (3’LTR). The internal region of this element presents a single ORF displaying the distinct gag and pol domains in the OR
    1,014 bytes (139 words) - 15:22, 19 January 2010
  • Element:Melmoth
    {{Element ...2009]]). ''Melmoth'' of ''Arabidopsis'' is taken as a representative. This element is 4769 bp in size, including 128-bp LTRs. The internal region encodes for
    1 KB (142 words) - 09:53, 13 January 2010
  • Element:Grande
    #REDIRECT [[Element:Grande1-4]]
    31 bytes (4 words) - 08:11, 26 March 2009
  • Phylogeny:GAG Ty1/Copia
    rect 400 28 468 44 [[Element:Batata|Batata]] rect 400 45 457 61 [[Element:Tto1|Tto1]]
    4 KB (358 words) - 09:09, 27 April 2010
  • Phylogeny:ENV Athila (Ty3/Gypsy)
    rect 52 12 97 28 [[Element:Calypso|Calypso2-2]] rect 52 33 107 49 [[Element:Cyclops-2|Cyclops-2]]
    720 bytes (85 words) - 13:58, 25 November 2009
  • Phylogeny:RNaseH Ty1/Copia
    rect 332 506 377 522 [[Element:CoDi6.6|CoDi6.6]] rect 332 486 366 502 [[Element:Zeco2|Zeco2]]
    4 KB (354 words) - 08:52, 20 August 2010
  • Phylogeny:INT Ty1/Copia
    rect 403 57 452 73 [[Element:Oryco1-1|Oryco1-1]] rect 403 42 434 58 [[Element:Araco|Araco]]
    4 KB (365 words) - 09:06, 27 April 2010
  • Element:Mabel
    {{Element ...s name is an acronym derived from "''Brugia <u>ma</u>layi <u>Bel</u>/Pao'' element". ''Mabel'' belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et
    1 KB (161 words) - 18:05, 5 January 2010
  • Phylogeny:AP Ty1/Copia
    rect 302 30 330 46 [[Element:Tse1|Tse1]] rect 302 48 329 64 [[Element:Ty1B|Ty1B]]
    4 KB (366 words) - 10:06, 26 April 2010
  • Phylogeny:RT Ty1/Copia
    rect 423 445 468 461 [[Element:CoDi4.4|CoDi4.4]] rect 423 428 468 444 [[Element:CoDi4.3|CoDi4.3]]
    4 KB (366 words) - 09:04, 27 April 2010
  • Phylogeny:GAGPOL Ty1/Copia
    rect 433 233 461 249 [[Element:Koco|Koco]] rect 433 213 486 229 [[Element:Yokozuna|Yokozuna]]
    4 KB (360 words) - 09:08, 27 April 2010
  • Phylogeny:POL Ty1/Copia
    rect 357 515 406 531 [[Element:Oryco1-1|Oryco1-1]] rect 357 495 404 511 [[Element:Melmoth|Melmoth]]
    4 KB (364 words) - 09:05, 27 April 2010
  • Element:DRM
    {{Element ...is 4.8 Kb in size including LTRs of 0.164 kb. The internal region of this element displays a Primer Binding Site (PBS), a single Open Reading Frame (ORF) tha
    1 KB (170 words) - 16:09, 19 January 2010
  • Element:SPM
    {{Element ...M is 5.2 Kb in size including LTRs of 0.13 kb. The internal region of this element displays a Primer Binding Site (PBS), three Open Reading Frames (ORFs) that
    1 KB (172 words) - 16:09, 19 January 2010
  • Element:Oryco1-2
    {{Element |description=''Oryco1-2'' (''Oryza Copia'' element type 1-2) is an ''Oryco''-like ''Ty1/Copia''-like LTR retrotransposon descr
    934 bytes (128 words) - 15:24, 19 January 2010
  • Element:Poco
    {{Element ...ulus trichocarpa'') ([[Literature:100596|Llorens ''et al''. 2009]]). This element belongs to ''Oryco'' clade within Branch 2 of the ''Ty1/Copia'' family ([[L
    1 KB (169 words) - 15:09, 19 January 2010
  • Element:Batata
    {{Element ...clade ([[Literature:100596|Llorens ''et al''. 2009]]). The genome of this element is 4248 bp in size and displays a single ORF encoding for both the gag and
    1 KB (153 words) - 14:30, 19 January 2010
  • Element:Vitico1-2
    {{Element ...TRs of 299 (5’LTR) and 295 nts long (3’LTR). The complete sequence of this element corresponds to the ''Vitis vinifera'' genome region included between the nu
    1 KB (191 words) - 10:25, 15 January 2010
  • Element:Tor1
    {{Element ...ed here with no apparent homology each other). The internal region of this element contains a Primer Binding Site (PBS), coding region and Polypurine Tract (P
    1 KB (155 words) - 16:01, 14 January 2010
  • Element:Tor2
    {{Element ...ed here with no apparent homology each other). The internal region of this element contains a Primer Binding Site (PBS), coding region and Polypurine Tract (P
    1 KB (158 words) - 23:41, 22 December 2009
  • Element:V12
    {{Element ...lm.nih.gov/nuccore/152926308 Kalendar ''et al.'' 2007], unpublished). This element belongs to ''Tork'' clade within the Branch 2 of ''Ty1/Copia'' family ([[Li
    1 KB (147 words) - 14:32, 19 January 2010
  • Element:Koco
    {{Element ...Bank accession [http://www.ncbi.nlm.nih.gov/nuccore/1255921 X96971]). This element belongs to ''Copia'' clade, which gives the name to a genus within the curr
    1 KB (197 words) - 16:00, 13 January 2010
  • Element:Cer10-1
    {{Element ...omains of LTR retrotransposons are clearly evident in the sequence of this element ([[Literature:8238|Bowen and McDonald 1999]]). No information about the Cer
    1 KB (201 words) - 17:46, 16 December 2009
  • Element:Tor4a
    {{Element ...ed LTRs with no apparent homology each other). The internal region of this element contains a Primer Binding Site (PBS), coding region and Polypurine Tract (P
    1 KB (168 words) - 23:42, 22 December 2009
  • Element:Tto1
    {{Element ...Nicotiana tabacum'' ([[Literature:31156|Hirochika ''et al.'' 1996]]). This element belongs to the ''Tork'' clade within Branch 2 of the ''Ty1/Copia'' family (
    1 KB (142 words) - 14:33, 19 January 2010
  • Element:Roo
    {{Element ...ndicate that ''Roo'' might be a putative recombinant between a ''Bel/Pao'' element and a ''Ty3/Gypsy'' retrovirus further evidence is required to clarify if s
    1 KB (204 words) - 17:12, 16 December 2009
  • Element:Bel
    {{Element ...is 6126 bp in size, including LTRs of 361 nt. The internal region of this element displays a two ORFs: the smallest of 152 amino acids (aa) codes for an unkn
    1 KB (158 words) - 14:01, 17 December 2009
  • Element:Nabel
    {{Element ...is an acronym derived from “''<u>Na</u>sonia vitripennis <u>Bel</u>/Pao'' element”. ''Nabel'' belongs to the ''Bel'' clade ([[Literature:14755|Copeland ''e
    1 KB (166 words) - 17:24, 16 December 2009
  • Element:Zebel
    {{Element ...onym derived from “<u>Ze</u>brafish ''<u>Bel</u>/Pao'' element”. ''Zebel'' element belongs to the ''Pao'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    1 KB (159 words) - 14:10, 11 December 2009

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Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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