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  • Element:TtKRBA2
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:49, 11 November 2011
  • Element:CfKRBA2
    {{Element [[Category:Element]]
    238 bytes (27 words) - 08:49, 11 November 2011
  • Element:CfSCAND3
    {{Element [[Category:Element]]
    238 bytes (27 words) - 08:49, 11 November 2011
  • Element:FcSCAND3
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:FcKRBA2
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:TsGINGER2
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:TcGINGER2
    {{Element [[Category:Element]]
    238 bytes (27 words) - 08:49, 11 November 2011
  • Element:SsSCAND3
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ISAf
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ISEc
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ISLa
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ISSc
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ISTv1
    {{Element [[Category:Element]]
    238 bytes (27 words) - 08:49, 11 November 2011
  • Element:HsSCAND3
    {{Element [[Category:Element]]
    238 bytes (27 words) - 08:49, 11 November 2011
  • Element:HsKRBA2
    {{Element [[Category:Element]]
    238 bytes (27 words) - 08:49, 11 November 2011
  • Element:BtSCAND3
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:BtKRBA2
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:EcKRBA2
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:EcSCAND3
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:AgFOB1
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ScFOB1
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ZrFOB1
    {{Element [[Category:Element]]
    240 bytes (27 words) - 08:49, 11 November 2011
  • Element:ApBIN1g
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1h
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1a
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1b
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1c
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1d
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1e
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1f
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1j
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1k
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1l
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1m
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1n
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1o
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApBIN1p
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN3a
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN3b
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN3c
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN4a
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN4b
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN4c
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN4d
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN4e
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN4f
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN5a
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN5b
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN5c
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011
  • Element:ApGIN5e
    {{Element [[Category:Element]]
    274 bytes (33 words) - 08:50, 11 November 2011

Page text matches

  • Element:Yokozuna
    {{Element ...Literature:55859|Ohbayashi ''et al.'' 1998]]). The internal region of this element contains a Primer Binding Site (PBS), a single long Open Reading Frame (ORF
    2 KB (234 words) - 15:48, 13 January 2010
  • Element:Spirobel
    {{Element ...is an acronym derived from "''Trichinella <u>spi</u>ralis <u>Bel</u>/Pao'' element". ''Spirobel'' belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''
    1 KB (163 words) - 17:48, 16 December 2009
  • Element:Cer7
    {{Element ...enorhabditis elegans'' ([[Literature:8238|Bowen and McDonald 1999]]). This element belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    2 KB (242 words) - 17:50, 16 December 2009
  • Element:Copia
    {{Element ...spp'' ([[Literature:59075|Peterson-Burch and Voytas 2002]]). The ''Copia'' element described in ''Drosophila simulans'' ([[Literature85100|Yoshioka ''et al.''
    2 KB (211 words) - 16:01, 13 January 2010
  • Phylogeny:RNaseH Ty3/Gypsy
    rect 361 12 419 28 [[Element:Retrosat-2|Retrosat-2]] rect 361 27 399 43 [[Element:Bagy-1|Bagy-1]]
    5 KB (452 words) - 08:53, 20 August 2010
  • Phylogeny:GAG Ty3/Gypsy
    rect 309 138 344 154 [[Element:Maggy|Maggy]] rect 309 117 350 133 [[Element:Dane-1|Dane-1]]
    5 KB (456 words) - 14:00, 25 November 2009
  • Phylogeny:GAGPOL Ty3/Gypsy
    rect 288 12 336 28 [[Element:Peabody|Peabody]] rect 288 31 307 47 [[Element:Del|Del]]
    5 KB (458 words) - 14:01, 25 November 2009
  • Element:Tdh2
    {{Element ...yomyces hansenii'' ([[Literature:54327|Neuvéglise ''et al.'' 2002]]). This element belongs to ''Ty (Pseudovirus)'' clade one of the three original genera on w
    2 KB (222 words) - 16:39, 27 January 2010
  • Phylogeny:POL Ty3/Gypsy
    rect 345 12 364 28 [[Element:Del|Del]] rect 345 29 393 45 [[Element:Peabody|Peabody]]
    5 KB (462 words) - 14:04, 25 November 2009
  • Element:Blastopia
    {{Element ...'' is 5.4 Kb in size including LTRs of 277 nt. The internal region of this element displays a Primer Binding Site (PBS) complementary to tRNA<sup>Pro</sup>, a
    1 KB (164 words) - 17:57, 10 November 2009
  • Phylogeny:RT Ty3/Gypsy
    rect 424 857 483 873 [[Element:Grande1-4|Grande1-4]] rect 424 876 460 892 [[Element:RIRE2|RIRE2]]
    5 KB (463 words) - 14:06, 25 November 2009
  • Element:Tnt-1
    {{Element |description=''Tnt1'' was the first ''Ty1/Copia'' transposable element found in ''Nicotiana tabacum'' ([[Literature:27170|Grandbastien ''et al.''
    1 KB (160 words) - 14:26, 19 January 2010
  • Element:Tas
    {{Element ...in any nematode species and received its name standing for transposon-like element of ''Ascaris'' ([[Literature:100599|Aeby'' et al.'' 1986]]). Two variant fo
    2 KB (276 words) - 14:58, 24 May 2010
  • Element:Cer2
    {{Element ...'' is 9.8 Kb in size including LTRs of 646 nt. The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Gly</sup>,
    1 KB (174 words) - 18:08, 10 November 2009
  • Element:CoDi5.5
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (177 words) - 16:31, 22 February 2010
  • Element:Cer3
    {{Element ...'' is 8.7 Kb in size including LTRs of 424 nt. The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Gly</sup>,
    1 KB (175 words) - 18:09, 10 November 2009
  • Element:Hydra3-1
    {{Element ...dra magnipapillata'' ([[Literature:100596|Llorens ''et al.'' 2009]]). This element belongs to the ''Tas'' clade ([[Literature:14755|Copeland ''et al.'' 2005]]
    1 KB (175 words) - 17:49, 16 December 2009
  • Element:Oryco1-1
    {{Element |description=''Oryco1-1'' (''Oryco'' ''Copia'' element type 1-1) is a ''Ty1/Copia''-like LTR retrotransposon found in the genome o
    1 KB (165 words) - 15:31, 19 January 2010
  • Phylogeny:INT Ty3/Gypsy
    rect 345 463 418 479 [[Element:Grasshopper|Grasshopper]] rect 345 447 386 463 [[Element:MGLR3|MGLR3]]
    5 KB (463 words) - 07:30, 28 April 2010
  • Element:Hydra2-1
    {{Element ...M is 4.8 Kb in size including LTRs of 0.22 kb. The internal region of this element displays a Primer Binding Site (PBS), a single Open Reading Frame (ORF) tha
    1 KB (176 words) - 16:06, 19 January 2010
  • Phylogeny:AP Ty3/Gypsy
    rect 482 396 503 412 [[Element:412|412]] rect 482 415 534 431 [[Element:Blastopia|Blastopia]]
    5 KB (463 words) - 13:57, 25 November 2009
  • Element:CoDi5.6
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (173 words) - 16:32, 22 February 2010
  • Element:Amn-ichi
    {{Element ...''Anolis carolinensis'' ([[Literature:95833|Piskurek et al. 2008]]). This element belongs to ''V-clade'' ([[Literature:100596|Llorens et al. 2009]]) the chro
    2 KB (238 words) - 10:02, 2 December 2009
  • Element:Ty1B
    {{Element ...ee of variation ([[Literature:100661|Boeke and Sandmeyer 1991]]). ''Ty1B'' element has been take as reference sequence to our studies. ''Ty1B'' belongs to ''T
    2 KB (308 words) - 16:38, 27 January 2010
  • Element:Fourf
    {{Element ...1996]]; [[Literature:23437|Fu et al. 2002]]). The internal region of this element contains a Primer Binding Site (PBS) complementary to a tRNA<sup>iMet</sup>
    2 KB (223 words) - 10:02, 25 January 2010
  • Element:Amn-ni
    {{Element ...'Danio rerio'' Zebrafish ([[Literature:100596|Llorens et al. 2009]]). This element belongs to V-clade ([[Literature:100596|Llorens et al. 2009]]) the chromovi
    2 KB (242 words) - 12:02, 2 December 2009
  • Element:CoDi5.4
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (178 words) - 16:30, 22 February 2010
  • Element:Kobel
    {{Element ...cronym derived from ''Saccoglossus <u>ko</u>walevskii'' <u>''Bel</u>/Pao'' element. ''Kobel'' belongs to the ''Sinbad'' clade ([[Literature:14755|Copeland ''e
    1 KB (183 words) - 14:07, 11 December 2009
  • Element:CoDi5.2
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (178 words) - 16:32, 22 February 2010
  • Element:Amn-san
    {{Element ...trotransposon characterized in the ''Xenopus (Silurana) tropicalis''. This element belongs to V-clade ([[Literature:100596|Llorens et al. 2009]]) the chromovi
    2 KB (248 words) - 19:13, 15 June 2020
  • Element:CoDi5.1
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (184 words) - 16:32, 22 February 2010
  • Element:Zeco2
    {{Element ...y1/Copia''-like LTR retrotransposon described, together its closer related element ''Zeco1'', in the genome of the zebrafish (''Danio rerio'') ([[Literature:9
    1 KB (194 words) - 09:01, 16 March 2010
  • Element:HMS-Beagle
    {{Element ...le'' is 7 Kb in size including LTRs of 266 nt. The internal region of this element displays a Primer Binding Site for a tRNA<sup>Lys</sup>, two ORFs for ''gag
    1 KB (174 words) - 08:52, 29 April 2010
  • Element:B1147A04.5
    {{Element ...4.5 is 22.2 Kb in size including LTRs of 1 Kb. The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Arg</sup>,
    1 KB (187 words) - 18:29, 10 November 2009
  • Element:1731
    {{Element ...''. 2009]]). ''1731'' is 4648 bp in size, including two 336-bp LTRs. This element contains a Primer Binding Site (PBS) for a tRNA<sup>iMet</sup>, two overlap
    1 KB (178 words) - 08:37, 14 January 2010
  • Element:Tse1
    {{Element ...iterature:54327|Neuvéglise ''et al.'' 2002]]). The internal region of this element presents a Primer Binding Site (PBS) and two overlapping Open Reading Frame
    1 KB (191 words) - 16:37, 27 January 2010
  • Element:Gabel
    {{Element ...an acronym derived from “''<u>Ga</u>sterosteus aculeatus <u>Bel</u>/Pao'' element”. ''Gabel'' belongs to the ''Suzu'' clade ([[Literature:14755|Copeland ''
    1 KB (196 words) - 14:06, 11 December 2009
  • Element:Suzu
    {{Element ...al PR and RH motifs have been found in the [[Gabel|''Gabel'']] ''Bel/Pao'' element also belonging to the ''Suzu'' clade ([[Literature:100596|Llorens ''et al.'
    2 KB (241 words) - 14:05, 11 December 2009
  • Element:PyRE1G1
    {{Element ...(except for a single nucleotide) 204-bp LTRs. The internal region of this element contains a single long Open Reading Frame (ORF) upstream and downstream fla
    1 KB (200 words) - 16:22, 22 December 2009
  • Element:Purbel
    {{Element ...ng LTRs of 583 nt (5’LTR) and 687 nt (3’ LTR). The internal region of this element displays a single ORF for ''gag'' and ''pol'' genes. The encoded gag produc
    1 KB (199 words) - 14:04, 11 December 2009
  • Element:XEN1
    {{Element ...([[Literature:35936|Kambol ''et al.'' 2003]]). The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Lys2</sup>
    1 KB (189 words) - 11:43, 7 September 2010
  • Element:Ogre
    {{Element ...e'' is 22.7 Kb in size including LTRs of 5 Kb. The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNA<sup>Arg</sup>,
    1 KB (194 words) - 16:38, 17 December 2009
  • Element:CoDi5.3
    {{Element ...umus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]])
    1 KB (190 words) - 16:33, 22 February 2010
  • Element:Sinbad
    {{Element ...' ([[Literature:14754|Copeland ''et al.'' 2006]]). About 50 copies of this element appear to reside in the ''S. mansoni'' genome.
    2 KB (213 words) - 18:05, 5 January 2010
  • Element:Cft-1
    {{Element ...of ''Cladosporium fulvum'' ([[Literature:49102|McHale et al. 1992]]). This element belongs to the ''Chromoviridae'' branch, term suggested ([[Literature:4725
    2 KB (238 words) - 16:28, 11 November 2009
  • Element:CFG1
    {{Element ...7 Kb in size including LTRs of 192 and 189 nt. The internal region of this element displays a Primer Binding Site (PBS), a single Open Reading Frame (ORF) tha
    2 KB (203 words) - 16:11, 19 January 2010
  • Element:CoDi6.6
    {{Element ...n size, including LTRs of 279 nt. The LTRs bounded internal region of this element encodes for two overlapping Open Reading Frames (ORFs). The first ORF conta
    2 KB (205 words) - 18:56, 8 April 2010
  • Element:CoDi6.4
    {{Element ...is 5237 bp in size, including LTRs of 413 nts. The internal region of this element encodes for a single Open Reading Frame (ORF) of 1441 amino acids containin
    2 KB (198 words) - 18:58, 8 April 2010
  • Element:RTvr2
    {{Element ...rature:83886|Xiao ''et al.'' 2007]]).Phylogenetic analyses reveal how this element belongs to ''Tork'' clade within the Branch 2 of ''Ty1/Copia'' family ([[Li
    1 KB (216 words) - 14:37, 19 January 2010
  • Element:pCal
    {{Element ...ndida albicans'' ([[Literature:48474|Matthews ''et al.'' 1997]]). ''pCal'' element belongs to ''Ty (Pseudovirus)'' clade one of the three original genera on w
    2 KB (252 words) - 16:39, 27 January 2010

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Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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