Search results

  • ...nger proteins involved in protein-protein interactions (for a review see [[literature:100845|Edelstein and Collins 2005]]). ...up A2 described in the mouse genome with a longer C-terminal extension ([[literature:100845|Edelstein and Collins 2005]]).
    1 KB (196 words) - 10:43, 7 November 2011
  • ...0816|Bellefroid et al. 1991]]; [[literature:33562 |Lander et al. 2001]]; [[literature:79836|Venter ''et al''. 2001]]). For simplicity´s sake the figure below sh ...erred from insects to the eutherians after to the methaterian-eutherian ([[literature:|Llorens ''et al''. submitted]]).
    3 KB (395 words) - 10:48, 4 November 2011
  • ...he A box, the B box, or both, it is always known as the ''KRAB'' domain ([[literature:100846|Urrutia 2006]]). ...A'' domain is present at N-terminus in ''KRBA2'' variants of [[SCAN/KRAB|''SCAN/KRAB'']] cellular integrases. The presence of ''KRAB-A'' box in ''KRBA2'' p
    888 bytes (135 words) - 10:44, 7 November 2011
  • ...'' dimerization domain is present in ZNF452/SCAND3 variants of [[SCAN/KRAB|SCAN/KRAB]] cellular integrases. ...rization to assemble the transpososome (synaptic complex). Nevertheless, [[literature:30830|Hickman ''et al''. 2005]] argue that ''hATd'' domain is a misnomer (n
    2 KB (204 words) - 10:36, 7 November 2011
  • ...like enzyme of 510-535 residues that is involved in the rDNA metabolism ([[literature:100808|Dlakic 2002]]). For simplicity´s sake the figure below shows the ge ...INT coded by ''FOB1'' is member of the Retroviral Integrase Superfamily ([[literature:100803|Nowotny 2009]]) of nucleic acid-processing enzymes involved in; a) s
    1 KB (181 words) - 10:29, 6 May 2011
  • ...genome of ''Dictyostelium discoideum'' ([[literature:82318|Wells 1999]]; [[literature:26055|Glockner ''et al''. 2001]]). Full-length ''Tdd-4'' and ''Tdd-5'' elem ...''-like transposons are members of the Retroviral Integrase Superfamily ([[literature:100803|Nowotny 2009]]) of nucleic acid-processing enzymes involved in; a) s
    1 KB (181 words) - 14:13, 15 July 2011
  • ...n-exon structured cut and paste DNA transposons described in eukaryotes ([[literature:100807|Bao ''et al''. 2010]]). Full-length ''GINGER2'' elements vary from a ...NGER2'' transposons are members of the Retroviral Integrase Superfamily ([[literature:100803|Nowotny 2009]]) of nucleic acid-processing enzymes involved in: a) s
    2 KB (213 words) - 20:13, 11 December 2012
  • ...ration of LTR retroelements [[literature:85461|Wright ''et al''. 2005]]; [[literature:70197|Singleton & Levin 2002]]). ...-exon structured genes and as single ORFs without introns of 0.8-2.4 kb ([[literature:|Llorens ''et al''. manuscript in preparation]]). For simplicity´s sake th
    3 KB (387 words) - 15:30, 3 June 2011
  • ...ll DDE enzymes see the reviews of [[literature:100803|Nowotny 2009]] and [[literature:100831|Hickman ''et al''. 2010]]) or in other words an unequivocal and comm ...eschotte & Pritham 2005]]; [[literature:61077|Pritham ''et al''. 2007]]; [[literature:100811|Kapitonov & Jurka 2006]])
    4 KB (486 words) - 20:12, 11 December 2012



Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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