Phylogeny:GAG Bel/Pao

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RooCer10-1NinjaCubelTamyPaoSuzuGabelPurbelZebelSinbadSaci-6KobelTasMabelCer7SpirobelHydra3-1TribelMaxBelMooseNabelGAG bel pao.png
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Method of phylogenenetic reconstruction

Phylogenetic reconstruction inferred based on the protein product encoded by the gag internal region of the Bel/Pao LTR retroelement family using CLUSTAL X 2.0 (Larkin et al. 2007) and the Neighbor joining (NJ) method of phylogenetic reconstruction (Saitou and Nei 1987) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps.

 




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Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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