Phylogeny:RT Ty1/Copia
Method of phylogenenetic reconstruction
Phylogenetic reconstruction inferred based on the reverse transcriptase protein (RT) encoded by the pol internal region of the Ty1/Copia LTR retroelement family using CLUSTAL X 2.0 (Larkin et al. 2007) and the Neighbor joining (NJ) method of phylogenetic reconstruction (Saitou and Nei 1987) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps