Phylogeny:AP Ty3/Gypsy
Method of phylogenenetic reconstruction
Phylogenetic reconstruction inferred based on the protease protein (AP) product encoded by the pol internal region of the Ty3/Gypsy LTR retroelement family using MEGA 4.1 (Kumar et al. 2008) and the Neighbor joining (NJ) method of phylogenetic reconstruction (Saitou and Nei 1987) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps.