Difference between revisions of "MediaWiki:Sidebar"

 
(4 intermediate revisions by the same user not shown)
Line 28: Line 28:
 
** Eukaryotic chromodomains|Chromodomains
 
** Eukaryotic chromodomains|Chromodomains
 
* TREES AND NETWORKS
 
* TREES AND NETWORKS
** Phylogeny:GagPol|Phylogenetic trees
+
** Phylogeny:POL_LTR_retroelements|Phylogenetic trees
** Phylogeny:CAARD|CAARD
+
** Caard|CAARD
 
* GyDB COLLECTION
 
* GyDB COLLECTION
 
** Collection alignments|Multiple alignments
 
** Collection alignments|Multiple alignments
Line 38: Line 38:
 
** https://gydb.org/images/3/3f/Genome.zip|Genome Seq. DB
 
** https://gydb.org/images/3/3f/Genome.zip|Genome Seq. DB
 
** https://gydb.org/images/9/94/LTRs_and_TIRs.zip|LTRs and TIRs Seq. DB
 
** https://gydb.org/images/9/94/LTRs_and_TIRs.zip|LTRs and TIRs Seq. DB
* TOOLS
 
** https://gydb.org/index.php/Checkalign_sequence_logos|CheckAlign 2
 
 
* DOMAINS
 
* DOMAINS
 
** LTRs|LTRs
 
** LTRs|LTRs
Line 54: Line 52:
 
** Movement protein|Movement protein
 
** Movement protein|Movement protein
 
** Virus associated protein|Virus assoc protein
 
** Virus associated protein|Virus assoc protein
** Inclusion body matrix protein|IBM protein
 
* ALIGNMENTS & HMMs
 
** http://gydb.uv.es/biotechvana/bioinformatics/main.php?document=collection|GyDB collection
 
* FORMER VERSION
 
** http://gydb.uv.es/gydb_nowiki|First release: Ty3/Gypsy and Retroviridae
 

Latest revision as of 19:14, 15 January 2021

  • SEARCH
  • Main
    • Intro|Intro
  • SUPERFAMILIES
    • Retroelements|Retroelements
  • SYSTEMS
    • LTR Retroelements|LTR Retroelements
    • GIN/GINGER TRs and INTs|GIN/GINGER TRs and INTs
  • FAMILIES
    • Ty3_Gypsy|Ty3/Gypsy
    • Retroviridae|Retroviridae
    • Bel/Pao|Bel/Pao
    • Caulimoviridae|Caulimoviridae
    • Ty1/Copia|Ty1/Copia
    • GINA|GINA
    • GINGER1|GINGER1
    • GINGER2|GINGER2
    • GINNY|GINNY
    • GINO|GINO
    • IS3/IS481-like|IS3/IS481-like
    • TDD|TDD
    • CIN-1|CIN-1
  • CLASSIFIED ELEMENTS
    • Elements|Elements
  • RELATED FAMILIES
    • Clan_AA|Clan AA
    • GIN-1|GIN-1
    • Eukaryotic chromodomains|Chromodomains
  • TREES AND NETWORKS
    • Phylogeny:POL_LTR_retroelements|Phylogenetic trees
    • Caard|CAARD
  • GyDB COLLECTION
    • Collection alignments|Multiple alignments
    • Collection HMM|HMM Profiles
    • Collection MRC|MRC sequences
  • REFSEQ DATABASES
  • DOMAINS
    • LTRs|LTRs
    • Gag|Gag
    • Protease|Protease
    • Reverse_Transcriptase|Reverse Transcriptase
    • Ribonuclease_H|Ribonuclease H
    • Integrase|Integrase
    • Envelope|Envelope
    • LTR retroelement chromodomains|Retro-chromodomains
    • dUTPase|dUTPase
    • Accessory_Genes|Accessory genes
    • Aphid transmission factor|Aphid trans factor
    • Movement protein|Movement protein
    • Virus associated protein|Virus assoc protein



Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

Contact - Announcements - Acknowledgments - Terms of use and policy - Help - Donate
Donating legal disclaimer - Terms and conditions of the donation