Difference between revisions of "MediaWiki:Sidebar"

 
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*CLASSIFIED ELEMENTS
 
*CLASSIFIED ELEMENTS
 
**Elements|Elements
 
**Elements|Elements
* NETWORKS
+
* RELATED FAMILIES
** Phylogeny:GagPol|Phylogenetic trees
+
** Clan_AA|Clan AA
** Phylogeny:CAARD|CAARD
+
** GIN-1|GIN-1
 +
** Eukaryotic chromodomains|Chromodomains
 +
* TREES AND NETWORKS
 +
** Phylogeny:POL_LTR_retroelements|Phylogenetic trees
 +
** Caard|CAARD
 +
* GyDB COLLECTION
 +
** Collection alignments|Multiple alignments
 +
** Collection HMM|HMM Profiles
 +
** Collection MRC|MRC sequences
 +
* REFSEQ DATABASES
 +
** https://gydb.org/images/1/1a/Cores.zip|Cores Seq. DB
 +
** https://gydb.org/images/3/3f/Genome.zip|Genome Seq. DB
 +
** https://gydb.org/images/9/94/LTRs_and_TIRs.zip|LTRs and TIRs Seq. DB
 
* DOMAINS
 
* DOMAINS
 
** LTRs|LTRs
 
** LTRs|LTRs
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** Movement protein|Movement protein
 
** Movement protein|Movement protein
 
** Virus associated protein|Virus assoc protein
 
** Virus associated protein|Virus assoc protein
** Inclusion body matrix protein|IBM protein
 
* RELATED FAMILIES
 
** Clan_AA|Clan AA
 
** GIN-1|GIN-1
 
** Eukaryotic chromodomains|Chromodomains
 
* ALIGNMENTS & HMMs
 
** http://gydb.uv.es/biotechvana/bioinformatics/main.php?document=collection|GyDB collection
 
* FORMER VERSION
 
** http://gydb.uv.es/gydb_nowiki|First release: Ty3/Gypsy and Retroviridae
 

Latest revision as of 19:14, 15 January 2021

  • SEARCH
  • Main
    • Intro|Intro
  • SUPERFAMILIES
    • Retroelements|Retroelements
  • SYSTEMS
    • LTR Retroelements|LTR Retroelements
    • GIN/GINGER TRs and INTs|GIN/GINGER TRs and INTs
  • FAMILIES
    • Ty3_Gypsy|Ty3/Gypsy
    • Retroviridae|Retroviridae
    • Bel/Pao|Bel/Pao
    • Caulimoviridae|Caulimoviridae
    • Ty1/Copia|Ty1/Copia
    • GINA|GINA
    • GINGER1|GINGER1
    • GINGER2|GINGER2
    • GINNY|GINNY
    • GINO|GINO
    • IS3/IS481-like|IS3/IS481-like
    • TDD|TDD
    • CIN-1|CIN-1
  • CLASSIFIED ELEMENTS
    • Elements|Elements
  • RELATED FAMILIES
    • Clan_AA|Clan AA
    • GIN-1|GIN-1
    • Eukaryotic chromodomains|Chromodomains
  • TREES AND NETWORKS
    • Phylogeny:POL_LTR_retroelements|Phylogenetic trees
    • Caard|CAARD
  • GyDB COLLECTION
    • Collection alignments|Multiple alignments
    • Collection HMM|HMM Profiles
    • Collection MRC|MRC sequences
  • REFSEQ DATABASES
  • DOMAINS
    • LTRs|LTRs
    • Gag|Gag
    • Protease|Protease
    • Reverse_Transcriptase|Reverse Transcriptase
    • Ribonuclease_H|Ribonuclease H
    • Integrase|Integrase
    • Envelope|Envelope
    • LTR retroelement chromodomains|Retro-chromodomains
    • dUTPase|dUTPase
    • Accessory_Genes|Accessory genes
    • Aphid transmission factor|Aphid trans factor
    • Movement protein|Movement protein
    • Virus associated protein|Virus assoc protein



Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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