Phylogeny:CHR eukaryote protein domains

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LegolasTmaPeabodyDelRetrosat-2Bagy-1GimliReinaSD06626pGloinT32E20.30Monkeyhrp3H06001.2GYMNOS/PICKLEATCH-DNA-bindingHsZinc-fingerhelicaseT04D1.4CG3696-PAHsCHDNABP5EF-3CVK2PTEFF11C18.100KIAA1416Beta-catenindMi-2DmCHD3F26F12.7CHD-4CHD-3REM1Ifg7hrp1CHD-1DmCHDNABPCHD-1bCHD-2polycomb-like/carrotMaggyDane-1C15H11.5RealPyggyH3-K9-HMTaseCgretCG8120-PAPyretCft-1SkippyPDD1F32E10.63B49F32E10.2T12E12.2Clr4C50A2.2K06A5.1ZMET5F13C5.190CMT1CMT3Amn-ichiAmn-sanmarY1Sushi-ichiAmn-niG-RhodoTsCpYp2SkipperGaladrielCSPolycomb-like/carrotMSL3-likeMSL-3A33_PLEWAALP13MRG15RBBP-1Y37D8A.11histoneacetyltransferaseECp181-carrotMOFESA1VC5.4PDDp3C29H12.5T09A5.8CHRpSuv39h1LdPhCHRassSWI6FYSpCHRBOXpL9MH3HP1HP1CeK01G5.2CG18186CG10683-PAMPc2POLYCOMBCAOHaP1-likeCEC-1CoDi4.1CoDi4.5CoDi4.3CoDi4.4CoDi3.1CoDi2.4GrasshopperTntom1MGLR3CSHP1CeCSK01G5.2CSAHP1M31CSCG15636-PACSHP1CoDi7.1CSFYSpCSFYSwi6CSHP1LeCSLHP1AtCSpolycombOsCHR all.png
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Method of phylogenenetic reconstruction

Phylogenetic reconstruction inferred based on eukaryotic chromodomains using MEGA 4.1 (Kumar et al. 2008) and the Neighbor joining (NJ) method of phylogenetic reconstruction (Saitou and Nei 1987) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps.

 




Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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