Phylogeny:AP Caulimoviridae dom2
Revision as of 15:24, 17 June 2010 by imported>Gydbwiki
Method of phylogenenetic reconstruction
Phylogenetic reconstruction inferred based on a second non-pol protease-like domain, encoded by the ORF VII of three soymoviruses and by the C-terminus of CSVMV-ORF I Cavemovirus (downstream to the MOV region), using MEGA 4.1 (Kumar et al. 2008) and the Neighbor joining (NJ) method of phylogenetic reconstruction (Saitou and Nei 1987) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps.