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** Eukaryotic chromodomains|Chromodomains | ** Eukaryotic chromodomains|Chromodomains | ||
* TREES AND NETWORKS | * TREES AND NETWORKS | ||
− | ** Phylogeny: | + | ** Phylogeny:POL_LTR_retroelements|Phylogenetic trees |
− | ** | + | ** Caard|CAARD |
* GyDB COLLECTION | * GyDB COLLECTION | ||
** Collection alignments|Multiple alignments | ** Collection alignments|Multiple alignments | ||
** Collection HMM|HMM Profiles | ** Collection HMM|HMM Profiles | ||
** Collection MRC|MRC sequences | ** Collection MRC|MRC sequences | ||
+ | * REFSEQ DATABASES | ||
+ | ** https://gydb.org/images/1/1a/Cores.zip|Cores Seq. DB | ||
+ | ** https://gydb.org/images/3/3f/Genome.zip|Genome Seq. DB | ||
+ | ** https://gydb.org/images/9/94/LTRs_and_TIRs.zip|LTRs and TIRs Seq. DB | ||
* DOMAINS | * DOMAINS | ||
** LTRs|LTRs | ** LTRs|LTRs | ||
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** Movement protein|Movement protein | ** Movement protein|Movement protein | ||
** Virus associated protein|Virus assoc protein | ** Virus associated protein|Virus assoc protein | ||
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Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061