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**TDD|TDD | **TDD|TDD | ||
**CIN-1|CIN-1 | **CIN-1|CIN-1 | ||
− | * NETWORKS | + | *CLASSIFIED ELEMENTS |
− | ** Phylogeny: | + | **Elements|Elements |
− | ** | + | * RELATED FAMILIES |
+ | ** Clan_AA|Clan AA | ||
+ | ** GIN-1|GIN-1 | ||
+ | ** Eukaryotic chromodomains|Chromodomains | ||
+ | * TREES AND NETWORKS | ||
+ | ** Phylogeny:POL_LTR_retroelements|Phylogenetic trees | ||
+ | ** Caard|CAARD | ||
+ | * GyDB COLLECTION | ||
+ | ** Collection alignments|Multiple alignments | ||
+ | ** Collection HMM|HMM Profiles | ||
+ | ** Collection MRC|MRC sequences | ||
+ | * REFSEQ DATABASES | ||
+ | ** https://gydb.org/images/1/1a/Cores.zip|Cores Seq. DB | ||
+ | ** https://gydb.org/images/3/3f/Genome.zip|Genome Seq. DB | ||
+ | ** https://gydb.org/images/9/94/LTRs_and_TIRs.zip|LTRs and TIRs Seq. DB | ||
* DOMAINS | * DOMAINS | ||
** LTRs|LTRs | ** LTRs|LTRs | ||
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** Movement protein|Movement protein | ** Movement protein|Movement protein | ||
** Virus associated protein|Virus assoc protein | ** Virus associated protein|Virus assoc protein | ||
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Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061