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**Caulimoviridae|Caulimoviridae | **Caulimoviridae|Caulimoviridae | ||
**Ty1/Copia|Ty1/Copia | **Ty1/Copia|Ty1/Copia | ||
− | * NETWORKS | + | **GINA|GINA |
− | ** Phylogeny: | + | **GINGER1|GINGER1 |
− | ** | + | **GINGER2|GINGER2 |
+ | **GINNY|GINNY | ||
+ | **GINO|GINO | ||
+ | **IS3/IS481-like|IS3/IS481-like | ||
+ | **TDD|TDD | ||
+ | **CIN-1|CIN-1 | ||
+ | *CLASSIFIED ELEMENTS | ||
+ | **Elements|Elements | ||
+ | * RELATED FAMILIES | ||
+ | ** Clan_AA|Clan AA | ||
+ | ** GIN-1|GIN-1 | ||
+ | ** Eukaryotic chromodomains|Chromodomains | ||
+ | * TREES AND NETWORKS | ||
+ | ** Phylogeny:POL_LTR_retroelements|Phylogenetic trees | ||
+ | ** Caard|CAARD | ||
+ | * GyDB COLLECTION | ||
+ | ** Collection alignments|Multiple alignments | ||
+ | ** Collection HMM|HMM Profiles | ||
+ | ** Collection MRC|MRC sequences | ||
+ | * REFSEQ DATABASES | ||
+ | ** https://gydb.org/images/1/1a/Cores.zip|Cores Seq. DB | ||
+ | ** https://gydb.org/images/3/3f/Genome.zip|Genome Seq. DB | ||
+ | ** https://gydb.org/images/9/94/LTRs_and_TIRs.zip|LTRs and TIRs Seq. DB | ||
* DOMAINS | * DOMAINS | ||
** LTRs|LTRs | ** LTRs|LTRs | ||
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** Movement protein|Movement protein | ** Movement protein|Movement protein | ||
** Virus associated protein|Virus assoc protein | ** Virus associated protein|Virus assoc protein | ||
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Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061