Template:Element Viewer

Genbank accession

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Type

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Genus

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Subfamily

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Family

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Group

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Host

[Explore the Tree Life Project]
[[Image:{{{hostPic}}}|center]]
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Description

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Structure

[[Image:{{{structure}}}|center]]

Figure not to scale. Long terminal repeats (LTRs) have been highlighted in blue. Motifs noted with lines indicate amino acid motifs preserved in each protein domain, abbreviations below mean:

MA=matrix PR=protease DU or DUT=DUTPase TM=transmembrane
CA=capsid RT=reverse transcriptase IN=Integrase CHR=chromodomain
NC=nucleocapsid RH=RNAseH SU=surface PBS=primer binding site
PPT=polypurine tract      


Related literature

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Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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