Mobilomics

The Server "Mobilomics" is an in-progress repository of databases with MGE features annotated from distinct organisms. In that sense, each organism mobilome can be considered as an ongoing project and, following the general collaborative aim of GyDB, we kindly encourage other researchers interested in the topic of mobile DNA elements "within-organisms" to contribute with data from any species or diverse improvement suggestions.

As an initial approach we have deposited the annotations of the complete set of LTR retroelements (LTR retrotransposons and retroviruses) identified in the first draft genome assembly of the pea aphid Acyrthosiphon pisum which is available within the NCBI ftp site or alternativelly through the Baylor College of Medicine Human Genome Sequencing Center ftp site.

You can access to detailed annotation data for each organism in the list below by clicking its name. You can also compare your query sequence to the database of your interest ( icon) and download the whole annotation mobilomic database of an organism ( icon).

Organisms

Organism AnnotationsBLASTDownload
A
Acyrthosiphon pisum
Reference:


Gillermo P. Bernet, Alfonso Muñoz-Pomer, Laura Domínguez-Escribá, Laura Covelli, Lucía Bernad, Sukanya Ramasamy, Ricardo Futami, Jose M. Sempere, Andrés Moya, Carlos Llorens. GyDB Mobilomics: LTR retroelements and integrase-related transposons of the Pea aphid Acyrthosiphon pisum genome (Submitted)

THE INTERNATIONAL APHID GENOMICS CONSORTIUM. 2010 . Genome Sequence of the Pea Aphid Acyrthosiphon pisum.

PLoS Biol, 8(2):e1000313 DOI / ISBN:10.1371/journal.pbio.1000313
BLASTDownload



Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061


Supported by


UV UNIVERSITAT DE VALÈNCIA UPV UNIVERSITAT POLITÈCNICA DE VALÈNCIA
Funded by


CDTI MCINN ENISA IMPIVA FEDER