Search results

  • |family=Ty3/Gypsy ...frame with the integrase domain, an env-like domain already under study ([[Literature:8938|Britten 1995]]).
    1 KB (216 words) - 18:08, 10 November 2009
  • |family=Ty3/Gypsy ...PPT) adjacent to the 3´LTR ([[Literature:69977|Simmen et al. 1998]][[Literature:69975|; Simmen and Bird. 2000]]). ''Cigr-1'' also exhibits, close to the 5&
    2 KB (274 words) - 12:23, 18 December 2009
  • ...rs of the ''Bel/Pao'' family are called semotiviruses (for a review, see [[Literature:88885|Eickbush and Jamburuthugoda 2008]]). ...''[[Retroviridae]]'', ''Bel/Pao'' LTR retroelements normally show a ''gag-pol'' genome (GAG-PR-RT-RH-INT) plus ''env'' (in the case of retroviruses) of v
    7 KB (985 words) - 07:24, 25 May 2010
  • ...use the similar pseudo symmetry of both dimeric and monomeric CAPs (see [[Literature:83261|Wlodawer and Gustchina 2000]]). ...4|Cascadella ''et al.'' 2005]]; [[Literature:43580|Li ''et al.'' 2005]]; [[Literature:85464|Jaskolski ''et al.'' 2006)]].
    6 KB (870 words) - 07:48, 4 May 2010
  • ...ial ''Ty3/Gypsy'' or ''Retroviridae'' simple retrovirus ([[Ty3_Gypsy|see ''Ty3/Gypsy'' family]]). ...a 5'Cap and a 3'poly-A tail ([[Literature:81403|Wang ''et al''. 1975]]; [[Literature:14008|Coffin and Billeter 1976]]).
    13 KB (1,793 words) - 14:36, 29 April 2010
  • ...third ORF ''env'' which confer them the status of potential retrovirus ([[Literature:29886|Havecker ''et al''. 2005]]). To date, there is no evidence about retr *Open Reading Frames (ORFs) for ''gag, pol'', (and ''env'' in retroviruses) genes.
    22 KB (3,069 words) - 12:02, 29 October 2012
  • ...ture:85479|Kumar 1998]] ; [[Literature:40507|Kumar and Bennetzen 1999]]; [[Literature:73901|Zaki 2003]]). ...retroviruses (see[[Retroviridae| ''Retroviridae'' family]]), a canonical ''Ty3/Gypsy'' LTR retroelement (in their inserted genomic state) usually show a g
    34 KB (4,803 words) - 10:39, 30 April 2010
  • [[Category:Phylogeny]] {{Phylogeny
    5 KB (458 words) - 14:01, 25 November 2009
  • [[Category:Phylogeny]] {{Phylogeny
    5 KB (462 words) - 14:04, 25 November 2009
  • [[Category:Phylogeny]] {{Phylogeny
    5 KB (463 words) - 14:06, 25 November 2009
  • [[Category:Phylogeny]] {{Phylogeny
    5 KB (463 words) - 07:30, 28 April 2010
  • [[Category:Phylogeny]] {{Phylogeny
    5 KB (463 words) - 13:57, 25 November 2009
  • ...ase'' (YR) retroelements''' and the '''''Penelope'' retrotransposons''' ([[Literature:88885|Eickbush and Jamburuthugoda 2008]]). ...n sequence similarity and other features known as the ''Ty1/Copia'', the ''Ty3/Gypsy'', the ''Bel/Pao'', and the ''Retroviridae'' families (for more detai
    8 KB (1,150 words) - 08:52, 7 July 2010
  • ...and LTR retrotransposons ([[Literature:86892|Bousalem ''et al.'' 2008]]; [[Literature:100596|Llorens ''et al.'' 2009]]). ...ngle-stranded discontinuities or gaps at specific sites of both strands ([[Literature:29391|Harper ''et al.'' 2002]]).
    22 KB (2,954 words) - 10:13, 9 August 2010
  • [[Category:Phylogeny]] {{Phylogeny
    12 KB (1,053 words) - 09:42, 3 May 2010
  • [[Category:Phylogeny]] {{Phylogeny
    14 KB (1,249 words) - 15:23, 17 June 2010
  • [[Category:Phylogeny]] {{Phylogeny
    13 KB (1,181 words) - 14:04, 1 August 2020
  • [[Category:Phylogeny]] {{Phylogeny
    13 KB (1,182 words) - 08:51, 20 August 2010



Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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