Main
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SUPERFAMILIES
RetroelementsSYSTEMS
LTR retroelementsGIN/GINGER TRs and INTs
FAMILIES
Ty3/GypsyRetroviridae
Bel/Pao
Caulimoviridae
Ty1/Copia
GINA
GINGER1
GINGER2
GINNY
GINO
IS3/IS481-like
TDD
CIN-1
CLASSIFIED ELEMENTS
Elements----
RELATED FAMILIES
Clan AAChromodomains
CGIN1
FOB1
GIN-1
GIN-2
SCAN/KRAB
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DOMAINS
LTRs and TIRsGag
Protease
Reverse Transcriptase
Ribonuclease H
Integrase
Envelope
Transposase
SCAN
KRAB
hATd
Retr. chromodomains
dUTPase
Accessory genes
ATF
MOV
VAP
TAV
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TREES AND NETWORKS
Phylogenetic treesClan AA Ref. DB
GyDB COLLECTION
REFSEQ DATABASES
TOOLS
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LINKS OF INTEREST
- ACLAME
- Bergman Lab site
- dbRIP
- DengueDB
- DPVweb
- EBI Genomes
- ENSEMBL
- euHCVdb
- HCV Databases
- HERVd
- HIV Databases
- ICTV
- Influenza Virus Database
- Influenza Virus Resource
- MEROPS
- Mobile DNA
- Mobile Genetic Elements
- Mobile Group II introns DB
- NCBI
- PBmice
- PBR
- PFAM
- Plant Repeat DB
- Repbase
- Retrobase
- Retroviruses
- RNA virus DB
- SARS-CoV RNA SSS
- TISdb
- Tree of Life Project
- Transpogene
- TRIPLES
- VBRC
- VIDA 2.0
- VIPERdb
- VirHostNet
- Vir-Mir DB
- VirOligo
- VirusMINT
- ViTA
POPULAR LINKS
Phylogeny:POL Caulimoviridae
From The Gypsy Database
Method of phylogenenetic reconstruction
Phylogenetic reconstruction inferred based on the integrases and transposases included in the GIN/GINGER category. Phylogenetic analysis performed with the PHYLIP 3.6 package, 100 bootstrap replicates and JTT substitution model for aminoacid replacement. Here is shown the consensus tree obtained from MRC method.