Phylogeny:GAGPOL Ty3/Gypsy

From The Gypsy Database

PeabodyDelBagy-1Retrosat-2LegolasTmaReinaGloinIfg7GimliBeetle1CerebaCRMREM1Tntom1GaladrielMonkeyG-RhodoTse3TF2TF1PyggyRealGrasshopperMaggyDane-1MGLR3CgretPyretSkippyCft-1marY1Amn-ichiAmn-sanSushi-ichiAmn-niTy3-1SkipperMicropiaBlastopiaMdg3CFG1DRMHydra2-1SPMMagGulliverCer4Cer5Cer6SURLCigr-1Tor2Tor4aTor1KabukiCsRN1BoudiccaCer2Cer3Cer1Mdg1412297Tom17.6IdefixTv1ZamTedHMS-BeagleYoyoNomadBurdockSpringerGypsyGypsyvirrGmr1Gmr1UlyssesCirceOsvaldoWootCalypsoCyclops-2Athila4-1Bagy-2DiasporaOgreTat4-1Tft2Cinful-1RetroSor1Grande1-4B1147A04.5RIRE2GAGPOL ty3 gypsy.png

Method of phylogenenetic reconstruction

Phylogenetic reconstruction inferred based on the integrases and transposases included in the GIN/GINGER category. Phylogenetic analysis performed with the PHYLIP 3.6 package, 100 bootstrap replicates and JTT substitution model for aminoacid replacement. Here is shown the consensus tree obtained from MRC method.

 

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