Phylogeny: AP clan AA aspartic peptidases

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CirceMDEG2586PA4048ATU0134MLL3161CC1307RP867RC1339ATU1893BR0864MLR0565Rsph030031MMC12119BLL3736MAGN030068BLL8127RPAL1816Mdeg020062PA4965PSPTO4961Pflu020001all7265RB8280AF0612SSO2164SSO1929SSO1523SSO1395ST0709PAE0531PAE0993AfRTL-1Cft-1CgretPyretSkippySkipperTy3-1marY1Dane-1MaggyFLJ38865Sushi-ichiMGLR3GrasshoppeRealPyggyTF2TF1Retrosat-2DelPeabodyTmaT32022.14LegolasReinaGloinGimliIfg7GaladrielTntom1MonkeyBeetle1CRMCerebaTse3Bagy-1OgreB1147A04.5Grande1-4OrizacinfuRIRE2RetroSor1Cinful-1Tat4-1Tft2Tft1Bagy-2DiasporaAthila4-1BAB61168.1Rigy-2VfCyclops2Cyclops-2Calypso4-1Calypso5-1Sto-4CopiaTy4YokozunaTy2Ty1LusenOsserTnp2Opie-2EndovirToRTL1Sire-1BARE-1EvelknieveRetrofitHospcotchTy51731FourfRIRE1MelmothbraMelmothAraTa1-3TntTto1EFVSFV-3SFV-1HFVFSVFFVHMS-BeagleNomadYoyoBurdockSpringerGypsyvirGypsy17.6297TomIdefixTv1ZamTedMicropiaMdg3Blastopia412Mdg1Cer1Cer3Cer2SURLMagGulliverCer4Cer5Cer6OsvaldoCigr-1UlyssesWootMuERV-LRTVL-IaKoRVMdEVGALVPERV-MSLRCHO-K1FeLVMuLVBAEVMWdSVHERV-EQ88269REVRTVL-H3LPDVEAV-HPRSVHERV-K10LOC386135MMTVSERVSRV-1MPMVSMRV-HJSRVBLVHTLV-1STcLV2PP16HTLV-2EIAVFIVVMVSA-OMVVCAEVHIV-1SIVAGMSIVMNDBIVSIVMACHIV-2KabukiCsRN1Plasmep1Sccpep1CatDceg1CatDdro1CatDschi1CatDgal1CatDhyn1CatDhum1CatDchi1CatDonc1Napamo1Renrat1Rencal1CatExen1Gastmac1Pepgal1PepArin1PepFequ1Sypepsyn1Ppeppen1Enpepcry1SAP7can1Cparap1Eimpeim1Mucorhi1hMem1-1hMem2-1Nephen1CND411AtASP381Nucelin1NM_11499_1Bs1Sccpep2Gastmac2PepFequ2PepArin2CatExen2Pepgal2Eimpeim2Napamo2CatDgal2CatDhum2CatDhyn2CatDonc2CatDchi2CatDceg2CatDdro2CatDschi2Plasmep2Rencal2Renrat2CND412NM_11499_2Nephen2Nucelin2AtASP382Mucorhi2SAP7can2hMem2-2hMem1-2Cparap2Sypepsyn2Ppeppen2Enpepcry2SVBVMMVDMVFMVCERVCaMVCYLCVSbCMVPCSVBRRVCVMVRTBVBSVKTSVSBVTBVCSSVCYMVcer7Tascer10-1cer8Cer9cer12cer1131230427312298133123286231196163312324864481821TramPaoBelDDICbriDDIGlamDDICerDDISpomDDIAniDDINcraDDIMgriDDIGzeaDDIRnorDDIDanDDIHumDDIXenDDIMmusDDIMfasDDIDroDDIanDDILeiDDIAraDDIPyoeDDIPfalNIXhNIXmNIX3NIXrnNIXMmSASP_MonodSASP_Bos_tSASP_CanisSASP_Mus_mSASP_Pan_tSASP_Homo_Clanaa.gif
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Method of phylogenenetic reconstruction

Phylogenetic reconstruction inferred based on clan AA of aspartic peptidases using Felsenstein´s protein sequence parsimony method based on (Eck and Dayhoff 1966) and (Fitch 1971) to generate a majority-rule consensus tree (Margush and McMorris 1981). As majority-rule consensus tree usually consists of all groups that occur more than 50% of the time, we take consensus values upper to 50 as an equivalent-bootstrapping reference.

 




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Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

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