https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3AGagPol 2026-04-28T20:18:55Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:GagPol&diff=6580&oldid=prev 2020-12-23T08:21:55Z

<p></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:21, 23 December 2020</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l131" >Line 131:</td> <td colspan="2" class="diff-lineno">Line 131:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>groups that occur more than 50% of the time, we take consensus values upper to 50 as</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>groups that occur more than 50% of the time, we take consensus values upper to 50 as</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>an equivalent-bootstrapping reference.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>an equivalent-bootstrapping reference.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">|citation=citation_test</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>}}</div></td></tr> <!-- diff cache key my_wiki:diff::1.12:old-6568:rev-6580 --> </table>

Rfutami https://gydb.org/index.php?title=Phylogeny:GagPol&diff=6568&oldid=prev 2020-12-04T22:50:05Z

<p></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 22:50, 4 December 2020</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l131" >Line 131:</td> <td colspan="2" class="diff-lineno">Line 131:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>groups that occur more than 50% of the time, we take consensus values upper to 50 as</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>groups that occur more than 50% of the time, we take consensus values upper to 50 as</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>an equivalent-bootstrapping reference.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>an equivalent-bootstrapping reference.</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">|citation=citation_test</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>}}</div></td></tr> <!-- diff cache key my_wiki:diff::1.12:old-1232:rev-6568 --> </table>

Wikiadmin https://gydb.org/index.php?title=Phylogeny:GagPol&diff=1232&oldid=prev 2010-08-13T14:41:58Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:GagPol.png|center<br /> rect 340 1033 363 1047 [[Element:VMV|VMV]]<br /> rect 340 1042 388 1056 [[Element:SA-OMVV|SA-OMVV]]<br /> rect 340 1024 368 1038 [[Element:CAEV|CAEV]]<br /> rect 340 1014 356 1028 [[Element:FIV|FIV]]<br /> rect 340 732 367 746 [[Element:Mdg3|Mdg3]]<br /> rect 340 741 384 755 [[Element:Blastopia|Blastopia]]<br /> rect 340 723 382 737 [[Element:Micropia|Micropia]]<br /> rect 340 596 364 610 [[Element:Woot|Woot]]<br /> rect 340 605 378 619 [[Element:Osvaldo|Osvaldo]]<br /> rect 340 614 365 628 [[Element:Circe|Circe]]<br /> rect 340 623 373 637 [[Element:Ulysses|Ulysses]]<br /> rect 340 641 362 655 [[Element:Cer3|Cer3]]<br /> rect 340 650 362 664 [[Element:Cer2|Cer2]]<br /> rect 340 632 362 646 [[Element:Cer1|Cer1]]<br /> rect 340 705 362 719 [[Element:Cer5|Cer5]]<br /> rect 340 714 362 728 [[Element:Cer6|Cer6]]<br /> rect 340 696 362 710 [[Element:Cer4|Cer4]]<br /> rect 340 687 377 701 [[Element:Gulliver|Gulliver]]<br /> rect 340 678 361 692 [[Element:Mag|Mag]]<br /> rect 340 668 367 682 [[Element:SURL|SURL]]<br /> rect 340 659 368 673 [[Element:Cigr-1|Cigr-1]]<br /> rect 340 31 365 45 [[Element:Cgret|Cgret]]<br /> rect 340 40 364 54 [[Element:Pyret|Pyret]]<br /> rect 340 22 371 36 [[Element:Skippy|Skippy]]<br /> rect 340 13 362 27 [[Element:Cft-1|Cft-1]]<br /> rect 340 49 371 63 [[Element:marY1|marY1]]<br /> rect 340 59 387 73 [[Element:Sushi-ichi|Sushi-ichi]]<br /> rect 340 68 372 82 [[Element:Maggy|Maggy]]<br /> rect 340 77 374 91 [[Element:Dane-1|Dane-1]]<br /> rect 340 86 376 100 [[Element:MGLR3|MGLR3]]<br /> rect 340 104 362 118 [[Element:Real|Real]]<br /> rect 340 113 369 127 [[Element:Pyggy|Pyggy]]<br /> rect 340 95 398 109 [[Element:Grasshopper|Grasshopper]]<br /> rect 340 131 363 145 [[Element:CRM|CRM]]<br /> rect 340 140 374 154 [[Element:Cereba|Cereba]]<br /> rect 340 122 377 136 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[[Element:Grande1-4|Grande1-4]]<br /> rect 340 505 399 519 [[Element:B1147A04.5|B1147A04.5]]<br /> rect 340 514 377 528 [[Element:Cinful-1|Cinful-1]]<br /> rect 340 523 387 537 [[Element:RetroSor1|RetroSor1]]<br /> rect 340 532 371 546 [[Element:Tat4-1|Tat4-1]]<br /> rect 340 541 359 555 [[Element:Tft2|Tft2]]<br /> rect 340 477 363 491 [[Element:Ogre|Ogre]]<br /> rect 340 550 386 564 [[Element:Cyclops-2|Cyclops-2]]<br /> rect 340 559 383 573 [[Element:Athila4-1|Athila4-1]]<br /> rect 340 568 381 582 [[Element:Diaspora|Diaspora]]<br /> rect 340 577 373 591 [[Element:Bagy-2|Bagy-2]]<br /> rect 340 587 377 601 [[Element:Calypso|Calypso]]<br /> rect 340 778 361 792 [[Element:REV|REV]]<br /> rect 340 814 367 828 [[Element:KoRV|KoRV]]<br /> rect 340 823 368 837 [[Element:GALV|GALV]]<br /> rect 340 805 369 819 [[Element:MdEV|MdEV]]<br /> rect 340 796 393 810 [[Element:PERV-MSL|PERV-MSL]]<br /> rect 340 787 377 801 [[Element:BAEVM|BAEVM]]<br /> rect 340 841 385 855 [[Element:RCHO-K1|RCHO-K1]]<br /> rect 340 851 368 865 [[Element:MuLV|MuLV]]<br /> rect 340 832 365 846 [[Element:FeLV|FeLV]]<br /> rect 340 769 378 783 [[Element:HERV-E|HERV-E]]<br /> rect 340 760 379 774 [[Element:RTVL-Ia|RTVL-Ia]]<br /> rect 340 750 369 764 [[Element:WdSV|WdSV]]<br /> rect 340 869 360 883 [[Element:HFV|HFV]]<br /> rect 340 878 369 892 [[Element:SFV-1|SFV-1]]<br /> rect 340 860 385 874 [[Element:MuERV-L|MuERV-L]]<br /> rect 340 896 376 910 [[Element:HTLV-1|HTLV-1]]<br /> rect 340 905 417 919 [[Element:STcLV2PP1664|STcLV2PP1664]]<br /> rect 340 914 376 928 [[Element:HTLV-2|HTLV-2]]<br /> rect 340 887 360 901 [[Element:BLV|BLV]]<br /> rect 340 969 370 983 [[Element:SRV-1|SRV-1]]<br /> rect 340 978 372 992 [[Element:MPMV|MPMV]]<br /> rect 340 960 368 974 [[Element:SERV|SERV]]<br /> rect 340 951 380 965 [[Element:SMRV-H|SMRV-H]]<br /> rect 340 942 366 956 [[Element:JSRV|JSRV]]<br /> rect 340 932 372 946 [[Element:MMTV|MMTV]]<br /> rect 340 923 390 937 [[Element:HERV-K10|HERV-K10]]<br /> rect 340 987 367 1001 [[Element:LPDV|LPDV]]<br /> rect 340 996 361 1010 [[Element:RSV|RSV]]<br /> rect 340 1005 357 1019 [[Element:BIV|BIV]]<br /> rect 340 1051 364 1065 [[Element:EIAV|EIAV]]<br /> rect 340 1060 366 1074 [[Element:HIV-1|HIV-1]]<br /> rect 340 1069 380 1083 [[Element:SIVMND|SIVMND]]<br /> rect 340 1078 381 1092 [[Element:SIVAGM|SIVAGM]]<br /> rect 340 1087 366 1101 [[Element:HIV-2|HIV-2]]<br /> rect 340 1096 380 1110 [[Element:SIVMAC|SIVMAC]]<br /> &lt;/imagemap&gt;<br /> |method=Phylogenetic reconstruction inferred based on the concatenated protein product<br /> encoded by the gag-pro-pol internal region common to Ty3/Gypsy and Retroviridae LTR<br /> retroelements using Felsenstein´s protein sequence parsimony method based on (Eck<br /> and Dayhoff 1966) and (Fitch 1971) to generate a majority-rule consensus tree<br /> (Margush and McMorris 1981). As majority-rule consensus tree usually consists of all<br /> groups that occur more than 50% of the time, we take consensus values upper to 50 as<br /> an equivalent-bootstrapping reference.<br /> }}</div>

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