Phylogeny:GPYF LTR retroelements


Tor1TedZamTv1IdefixTom29717.6NomadBurdockSpringerGypsyvirGypsyHMS-BeagleYoyoDrFV-1BFVEFVFFVHFVSFV-1Grande1-4BIVEIAVCAEVVMVSA-OMVVHIV-1SIVAGMSIVMNDHIV-2SIVMACFIVMuERV-LBLVHTLV-2STcLV2PP1664HTLV-1RSVLPDVJSRVK-HERVHERV-K10MPMVSRV-1SERVSMRV-HMMTVPyERVUlyssesRTVL-IaPyggyCerebaTasCirceSinbadSURLCigr-1GulliverMagCer4Cer5Cer6SPMHydra2-1CFG1DRMNinjaHydra3-1Cer10-1SpirobelMabelCer7Saci-6KobelZebelTamyCubelPurbelSuzuGabelRooMooseTribelBelNabelMaxSnRVXEN1ZFERV-2ASSBSVZFERVWdSVHERV-EREVBAEVMPERV-MSLMdEVKoRVGALVRCHO-K1FeLVMuLVOgreTat4-1Tft2B1147A04.5RIRE2RetroSor1Cinful-1Bagy-2DiasporaAthila4-1CalypsoCyclops-2BlastopiaMdg3Micropia412Mdg1BoudiccaCsRN1KabukiG-RhodoTor4aTF1TF2GaladrielMonkeyTntom1ReinaGimliGloinIfg7PeabodyRetrosat-2Bagy-1DelTmaLegolasWootOsvaldoTor2Cer2Cer3Beetle1CRMCer1rGmr1Gmr1Cft-1marY1Amn-ichiAmn-sanSushi-ichiAmn-niSkippyCgretPyretMaggyDane-1RealGrasshopperSkipperTy3-1Tse3MGLR3GPYF ltr retroelements.png
About this image

Method of phylogenenetic reconstruction

Phylogenetic reconstruction inferred based on the GPYF module of the encoded integrase protein common to Ty3/Gypsy, Retroviridae, Bel/Pao, Caulimoviridae and Ty1/Copia LTR retroelement families using MEGA 4.1 (Kumar et al. 2008) and the Neighbor joining (NJ) method of phylogenetic reconstruction (Saitou and Nei 1987) with 100 bootstrap replicates under the conditions, uniform rates among sites and pairwise deletion of gaps.

 




Welcome to the Gypsy Database (GyDB) an open editable database about the evolutionary relationship of viruses, mobile genetic elements (MGEs) and the genomic repeats where we invite all authors to contribute with their knowledge to improve and expand the topics.
Cite this project:

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J.M., Tamarit, D., Aguilar-Rodriguez, J. Vicente-Ripolles, M., Fuster, G., Bernet, G.P., Maumus, F., Munoz-Pomer, A., Sempere, J.M., LaTorre, A., Moya, A. (2011) The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061

Contact - Announcements - Acknowledgments - Terms of use and policy - Help - Donate
Donating legal disclaimer - Terms and conditions of the donation