Element:Ogre

From The Gypsy Database

Description

Ogre is a giant LTR retrotransposon described in the genome of Pisum sativum (Neumann, Pozarkova and Macas 2003). This element belongs to a lineage of plant LTR retrotransposons (Tat), sibling of other lineage of putative plant endogenous retroviruses (Athila), providing evidence of a shared ancestral lineage originally described as class A by Wright and Voytas (1998). The genomic structure of Ogre is 22.7 Kb in size including LTRs of 5 Kb. The internal region of this element displays a Primer Binding Site (PBS) complementary to a tRNAArg, a Polypurine Tract (PPT) close to the PBS, and three Open Reading Frames for ORF-1, gag/pr and pol (Neumann, Pozarkova and Macas 2003). Ogre also has an Untranslated Region (UTR) of approximately 2.5 Kb between the integrase domain and the 3´LTR.

Structure

Ogre.png


Figure not to scale. If present, long terminal repeats (LTRs) have been highlighted in blue. Amino acid motifs noted with lines indicate the conserved residues in each protein domain, abbreviations below mean:

MA=matrix PR=protease DU or DUT=dUTPase TM=transmembrane TAV or IBMP=transactivator/viroplasmin or inclusion body matrix protein
CA=capsid RT=reverse transcriptase INT=Integrase CHR=chromodomain
NC=nucleocapsid RH=RNaseH SU=surface MOV=movement protein
PPT=polypurine tract PBS=primer binding site ATF=aphid transmission factor VAP=virion associated protein

Related literature

Genbank accession:AY299398 (nuc; 14501-37253)
Clade:Tat
Cluster or genus:Athila/Tat
Branch or class:Branch 2
Family:Ty3/Gypsy
System:LTR retroelements
Host:
Explore the Tree Life Project
Pisum sativum.jpg
Pisum sativum
Courtesy of Renee Comet, National Cancer Institute
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