Element:Athila4-1

From The Gypsy Database

Description

Athila is a centromere-associated LTR retroelement characterized in Arabidopsis thaliana (Pelissier et al. 1995; 1996; Copenhaver et al. 1999). Athila gives the name and belongs to Athila clade, a lineage of possible retroviruses in plants (Wright and Voytas 2002), which is sibling of Tat clade, a lineage of plant LTR retrotransposons. Both lineages provide evidence of a shared ancestral lineage originally described as Class A by Wright and Voytas (1998). Athila have several subtypes, the figure below describes the full-length consensus for the subtype 4-1, which has been taken as a representative. Athila-4 is 14 Kb in size including LTRs of 1.8 Kb. The internal region of this retrovirus displays a Primer Binding Site (PBS) complementary to a tRNAAsp, Open Reading Frames (ORFs) for gag, pol, and env genes, and two Polypurine Tracts, PPT1 and PPT2, adjacent to the 3´LTR (Wright and Voytas 2002).

Structure

Athila4-1.png


Figure not to scale. If present, long terminal repeats (LTRs) have been highlighted in blue. Amino acid motifs noted with lines indicate the conserved residues in each protein domain, abbreviations below mean:

MA=matrix PR=protease DU or DUT=dUTPase TM=transmembrane TAV or IBMP=transactivator/viroplasmin or inclusion body matrix protein
CA=capsid RT=reverse transcriptase INT=Integrase CHR=chromodomain
NC=nucleocapsid RH=RNaseH SU=surface MOV=movement protein
PPT=polypurine tract PBS=primer binding site ATF=aphid transmission factor VAP=virion associated protein

Related literature

Genbank accession:AC007209 (nuc; 22122-8571)
Clade:Athila
Cluster or genus:Athila/Tat
Branch or class:Branch 2
Family:Ty3/Gypsy
System:LTR retroelements
Host:
Explore the Tree Life Project
Arabidopsis thaliana.gif
Arabidopsis thaliana
Photo: www.knoch1.de
Browse all elements
Jump to: navigation, search


This website use cookies, by continuing to browse the site you are agreeing to our use of cookies. More info about our cookies here.